| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0416 |
|---|
| Symbol | |
|---|
| ID | 5537878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 527581 |
|---|
| End bp | 529617 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640892578 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_001430565 |
|---|
| Protein GI | 156740436 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.985586 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTATGA CATCTTCATA CACCGATCTT GACCGGCTTG CTATCAATAC GATTCGCACG
CTTGCAATCG ATGCCGTACA GGCTGCCAAT TCCGGGCATC CCGGTATGCC GCTGGGCGCA
GCGCCGATGG CGTATGTGCT GTGGACACGC TTTTTGCGTT TCGATCCGGT CGATCCGTCC
TGGCCCGACC GTGATCGCTT CGTTCTTTCC GCCGGTCACG GCTCGATGCT CCTCTACAGT
CTGCTGCACC TGACCGGCTT CGACCTCTCG CTCGATGAAC TGCGGCGCTT CCGTCAGTGG
GGATCGAAAA CGCCCGGGCA TCCGGAACGC CATCTGACGC CAGGGGTCGA GGTGAGCACC
GGTCCATTGG GTCAGGGGTT TGGGAATGGC GTGGGCATGG CGCTTGCCGA GGCATTTCTG
GCTGCGACGT ACAACCGTCC CGGTCATACG CTCTTTGATC ATTACACGTA TGCGATTGTC
AGCGATGGCG ATCTGATGGA GGGGGTGGCT GCCGAGGCGG CGTCGCTCGC AGGGCATTTG
AAGCTGGGCA AGTTGATCTA CCTGTACGAC GACAACCATA TTTCGCTCGA TGGTCCGACC
AGCCTGGCGT TCACTGAGGA TGTGTTGCTG CGCTTCGCGG CGTATGGCTG GCATACGGCG
CGCGTTCCCG ATGGCAATGA CCTCGATGCC ATCGAGGCGG CGATCCGCGA GGCGCAGGCT
GTGACGGATC GACCATCACT GATTGCAGTG CGCACGATCA TTGGCTATGG CAGCCCGCTG
GCCGGCACGA GCAAGGTGCA TGGCAGCCCG CTCGGCGCCG AAGGCGTGCG CGCCACGAAA
CAGGCGTTGG GGTGGAATCC GGATGCCGCA TTCTTCGTGC CAGAAGAGGT TCACGCATTG
ATGCGTCTGG CGCGGGAACG CGGCGCTGCC CTGCGCAGCG ACTGGCAGGC GCGCTTCGAG
GCGTATGCCG CAGCATATCC GACCGAAGCG CGCGGGTTGC GCCAGGCGCT GGCGGGAACG
CTGCCGGAAG GCTGGATAGA GCGCCTGCCG ACGTTCAGCC CGACCGGCGG CGACCTGGCG
ACGCGCGAGG CGTCCGGGAA GACGATCCAG GCGCTGTATG AGGCAATTCC CTGGATGATC
GGCGGGTCTG CCGATCTCTC GGAAAGCACC AAAACGCCGT ATGCGACAAC GACGAGTTTT
CAGGCAAACT GCCGCACCGG GCGGGTGATC TGGTTCGGTG TGCGCGAGCA TGCGATGGGG
GCGATCCTCA ATGGCATGGC GGCGCACGGC GGTGTCAGGC CATATGGCGG GACGTTCCTG
GTCTTTTCGG ATTATATGCG CGGCGCCATT CGCCTGGCGG CGTTGTCGCA TCATCCGGTC
GTCTATGTCT TTACCCACGA TAGTATTGGT CTGGGGGAAG ACGGTCCAAC GCACCAACCG
GTCGAGCATC TGGCGGCGCT ACGCGCCATT CCGAACCTGT GGGTCATCCG TCCTGCCGAT
GCGAACGAAA CGGTGATCGC CTGGCAGATC GCCCTCGAAC GCGCCGATGG TCCCACAGCG
CTGATCTTGA GCCGGCAGAA ATTGCCGGTG TTCGACCGGT CGGCGCTGGC GCCTGCCGAA
AATGTGCGGC GCGGCGCATA TGTGTTATGC GACGCTGAAG AAGAGACGCT GCACATCATT
CTGATGGCGA GCGGTTCGGA GGTAGCGCTG GCGCTCGCAG CGCAGGCGGC GCTGCGGGAA
CACGGTGTAG CGGCGCGCGT GGTCAGTTTT CCGTCATGGG AATTGTTTGC CTTGCAACCC
CAGGAATATC GCGAGAGCGT GTTGCCGCCG GATGTTCGCG CGCGGCTGGC GATTGAGGCG
GGTGTGGCGC AGGGGTGGGA ACGCTGGGTC GGCGATCAGG GCGCCTGTAT CAGCGTGGAG
ACGTTCGGAG CTTCAGCGCC GTATCAGGTT GTGTTCCAGC AGTATGGGTT CACCGTTGAG
AATGTCGTCG AGCGGGCGCT GAAGGTGTAT GCGCGGGTTT CAGGACGGGA AGGTTGA
|
|---|
| Protein sequence | MIMTSSYTDL DRLAINTIRT LAIDAVQAAN SGHPGMPLGA APMAYVLWTR FLRFDPVDPS
WPDRDRFVLS AGHGSMLLYS LLHLTGFDLS LDELRRFRQW GSKTPGHPER HLTPGVEVST
GPLGQGFGNG VGMALAEAFL AATYNRPGHT LFDHYTYAIV SDGDLMEGVA AEAASLAGHL
KLGKLIYLYD DNHISLDGPT SLAFTEDVLL RFAAYGWHTA RVPDGNDLDA IEAAIREAQA
VTDRPSLIAV RTIIGYGSPL AGTSKVHGSP LGAEGVRATK QALGWNPDAA FFVPEEVHAL
MRLARERGAA LRSDWQARFE AYAAAYPTEA RGLRQALAGT LPEGWIERLP TFSPTGGDLA
TREASGKTIQ ALYEAIPWMI GGSADLSEST KTPYATTTSF QANCRTGRVI WFGVREHAMG
AILNGMAAHG GVRPYGGTFL VFSDYMRGAI RLAALSHHPV VYVFTHDSIG LGEDGPTHQP
VEHLAALRAI PNLWVIRPAD ANETVIAWQI ALERADGPTA LILSRQKLPV FDRSALAPAE
NVRRGAYVLC DAEEETLHII LMASGSEVAL ALAAQAALRE HGVAARVVSF PSWELFALQP
QEYRESVLPP DVRARLAIEA GVAQGWERWV GDQGACISVE TFGASAPYQV VFQQYGFTVE
NVVERALKVY ARVSGREG
|
|---|
| |