Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0405 |
Symbol | |
ID | 5537867 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 512030 |
End bp | 513181 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640892568 |
Product | transposase IS4 family protein |
Protein accession | YP_001430555 |
Protein GI | 156740426 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00559123 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGCCT GTGATGAATT GCACTCGAAA ATGGAAGAAC CCATTCGTCC GCTTGTCGAC GTCAAACACG CCCATCACCT CTCGAATTGG TTGTGGATCG TCTGCGGGAT TCTGCTCAGT GGTTCGGTCG CATTAAGCAA GATTGCCCTT TACTTGCCCC TCACGGCGCA AGCGGAAGGG CGGATTGCTC GCATTCGCCG TTGGTTGAAG AATGTGTACG TCGATGTCTG GCAATTCTAC CGTCCCCTGC TGGAGAAGGT GTTGCAAGGA TGGCAAGCCG CAGAGGCGGC GGTGATCCTG GACGGCGTCA TGGTCTTCGG CGACCGCTTG CAGATTTTCC GTCTCTCCTT GCGACATGGC AGTCGTGCCA TCCCTTTGTC CTGGGTGGTC GTGCCGGGCA AAGGGCTGAC CAGCGTCGAA CGGTTGCGTC CATTGATCCA GCGGGCCGCA GAGTTCCTGG CCCCACGCGT CGGCGCCGTT GTGTTTCCGG CCGATCGCGG CTTTCGCGAT GTAGAATGGG CCGCTCTGTG TCTGGAAGTC GGTTGGCATT ATGTCATCCG ACTGGCCAAC AACACCCTCA TCACTCTGGA GGATGGCCGC CGCCTGTCCA TCGCGGCGCC GGGTGTGCCG CCTGGGGAAG CCTGCTATTG GCGGAACGCG GCCATCACCC AGTCGCAGGA CTGGCCTGCC AACCTCTCTG TAACCTGGAC CAAAGGCGCA CGCGGTCAGG CGCCGGAATT GCTGGCCGTG ATGAGCGATC GGCGCGCCTG CAACCAGCGG TTGCGTGAAT ATGGTTGGCG TATGAGCATT GAAGAGAGTT TCCGCGATGA CAAATCGGGC GGCTTTGACC TGGAACATAC ACGCCTCCAA GACCCGCAAC GGCTAGAACG CCTGTTGTTG GCGGTCGCAA TCGCCACACT TTGGCGTCAC GAATTGGGCG AGCAGGCGCT CCACGATCAC AGCGTCCAGG CCGAACTCGA CCCAGGCGGC AAGCGCCGCG AACTCAGCAT CTTCCAACTA GGCCTGCGAT TCCTCAGGCG GTGTTTGTTA GCGCTTACCA CCGCGCGCTT ACCCAAATTG CGGTTGGTTT TGTCCAACTT GGCGCTCGAG CCCCTCTCAC CAAGACACCT GGCCAAGGAG AAATGTCAGT GA
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Protein sequence | MSACDELHSK MEEPIRPLVD VKHAHHLSNW LWIVCGILLS GSVALSKIAL YLPLTAQAEG RIARIRRWLK NVYVDVWQFY RPLLEKVLQG WQAAEAAVIL DGVMVFGDRL QIFRLSLRHG SRAIPLSWVV VPGKGLTSVE RLRPLIQRAA EFLAPRVGAV VFPADRGFRD VEWAALCLEV GWHYVIRLAN NTLITLEDGR RLSIAAPGVP PGEACYWRNA AITQSQDWPA NLSVTWTKGA RGQAPELLAV MSDRRACNQR LREYGWRMSI EESFRDDKSG GFDLEHTRLQ DPQRLERLLL AVAIATLWRH ELGEQALHDH SVQAELDPGG KRRELSIFQL GLRFLRRCLL ALTTARLPKL RLVLSNLALE PLSPRHLAKE KCQ
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