| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0386 |
|---|
| Symbol | |
|---|
| ID | 5537848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 484334 |
|---|
| End bp | 486691 |
|---|
| Gene Length | 2358 bp |
|---|
| Protein Length | 785 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640892549 |
|---|
| Product | serine/threonine protein kinase |
|---|
| Protein accession | YP_001430536 |
|---|
| Protein GI | 156740407 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.462042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATAG CAAATGCGCC TGCTGTGCAT CAGACGAGGT TTCATGTGCT GACACCTGGA
ACAATCCTGC AAGATCGCTA TCTGATCGAA CGGCTCCTGG ACCGCAGCCC CGCCGGTGAT
TTCTATCTGG CGCGCGACCA GCGCACAAAG CAACCTGTTG ATGTCAAAGC CATCACCCGT
ACTGAGCCGG ATGTCGATAC CCTGTTTGCG CGCGAAGTTG CGGCGCTGGC CTCCTTGCGA
CACCCGGCGC TCCCTGCCGT CGTCGATATG TTTGCTGCGC CACTCGGGCG CTTTATCGTC
TTCGATCATA TTCCAGGTCT GAGTCTGGAA GACATTCGCG CGCGATCCCC CCACGCTCAA
CTTGACGCGG ATTCGGCGAT TCGGCTCTTG CAACCAGTGC TCGATGCACT CGATCAGATG
CACCGTCATC CGGCGCGCCT CGCGCATCGC AATGTGCGTC CGGCAAACAT TCGGATTACG
GATGCCGGCC AGGTCTATCT CACCAATCCC GACGTCGCCG GACGATCCGG CGCTCCTTTC
GATGGACGTG ATCTGCACGC CGATCTGTGC GGCATCGGCG CAACGCTCTA CACGCTCCTC
ACCGGCGCCG CGCCGCCTCT CCCTGCGGAA AGAGTGCAAC ACGACACGCT GCGTCCGGTG
CGCCAGGTCC GTCCCGATCT CTCACCCGAA CTGGCGCAGG TCATCCAACG GTTGTTGTCC
TTCGACCCGG CGCAGCAGTA CGCTTCCGCT GCCGAGGCGC ACCGGGCGCT CACCGAGGCG
GCCCCCGATG TGATCTGCCC GCGCTGCTCG AAACCCAATC GCGCCAGCGC GCGGTTCTGC
CGCTCGTGTG GCGCGCCGCT GCCAGCGTCC GATCCGCGCA GCGCAATTCG CGCGTTTATA
GGGAAACTTC CATCCCTGCC GGTTGCAACG TCTCCCCCCG ATACAGCCAC CGCGACGTTC
GACTTCCACA CCCCCACTAC CTCTGCCGCC ACTACTGTCG CCGCCGTCTC CGGCGTCGCG
TCAAAATCTG CCACGCCCGC CCTCCCATCT GCCGATGCTC CGACCGTCGA CTCCCCGCCC
GCCGATGCCC CGACCGTCAC CTCGCCCCCC GCTGATGCCA CAACTTTCAT CTCGCCGCCT
GCCGACGCAC CAACCGTCAC GTCGCCCCCT ACCGACGCGG CGACCTCGAT CTCACCTCCC
GGCAAGCCAG CATCGGTAGA GGCAACCGCA GAAGCGCCCG CAGTCTCAAT TCCTGCACCA
CCCCCCGCCG GCGCACCTCC GGCAGCGCCG GTTGGTGGTG CGCAACGTCA GCGCAGCATG
CTGATCGGCG GGATCATCGC TGCAATCGTT CTCCTGCTGG CGTGTGTGGG TGGCGGGTAT
TTTGCGCTGG GAGCAGTAGG GTTGCTGCCA GGCAGCGCCA CTGCCGTCTC CGGCGTCTCG
CCGGCGCCGC AGGCAACGCG GACACCAGCA ACCGGTGGGA GCGCTGCAAC TGCCGAGGCG
CGGCAGAATG CGACCGCGAC CGCCATCGCC ATAGCGCAAC GAGCAACCGG CACGGCGCGC
GCCGAAGGGC AGACGACGAC AGCACAGGCG GGACAATCGT CAGAGCAACA GACAGCGACC
GCCATGGCCC GCCAGACGGT CGCCGTAGCA GCGCAGCAGA CGGCAGCCGC TATCGCTGCC
GCCACCCAAA CTGCCGCCGT GCCGACTGCA ACGCCTGCGC CGCAGTCGCT CATTCCGCAG
CCTGGTGCGC TCTCGCTGGC GGATTACCAG GCGCAGACAC GCGGACTACG CCAACTTCTG
TTCGAAACCT TTGATCGAGG CGAGCGCACG AAAGCAATCT GGACCCAGGT GGACAATGAG
CGGCGTCGGG CGGCGCTGCG CGACAATCTC TACTACCTGA CGGTCAAAAC GCCAGACCTC
ACAACATGGT ACACGTGGAG TCGCGATCTG GGAAATACGT ACAACATTGA GTTAAGTGTC
GCGTTTCAGA CCGTCGGTGC GCCGGCATCG GTCGGCATTG CCTTCGATGT GCAACCCGAC
GCGAACAGTG GGCTGTTCTT CGAGGTGACG AGCGATAAAC GCTGGTTGTT CAGCACCGTG
GTCGATGGAC AGTTCATCAC AGAAGGCAGT ACCGGTCTCA TTCCAGACGA AATCATCGTC
GATGGCGTTG GCACAAACGT CCTCTGGGTT GTGCGCACCC CCAGCGAAAT CCAACTTTGG
ATCAACAGCA AGCACGTGGC GACACTTCCG CCGAGTCCCT TTCCTGGCGG GCAGGCAGGC
GTGTGCGCCT CATCGTTCAG CGGGCTGACC GAGCCGGCCA CGGTGATCGT GGACAATTTT
CGCGCCAGGG CGCCATAG
|
|---|
| Protein sequence | MPIANAPAVH QTRFHVLTPG TILQDRYLIE RLLDRSPAGD FYLARDQRTK QPVDVKAITR
TEPDVDTLFA REVAALASLR HPALPAVVDM FAAPLGRFIV FDHIPGLSLE DIRARSPHAQ
LDADSAIRLL QPVLDALDQM HRHPARLAHR NVRPANIRIT DAGQVYLTNP DVAGRSGAPF
DGRDLHADLC GIGATLYTLL TGAAPPLPAE RVQHDTLRPV RQVRPDLSPE LAQVIQRLLS
FDPAQQYASA AEAHRALTEA APDVICPRCS KPNRASARFC RSCGAPLPAS DPRSAIRAFI
GKLPSLPVAT SPPDTATATF DFHTPTTSAA TTVAAVSGVA SKSATPALPS ADAPTVDSPP
ADAPTVTSPP ADATTFISPP ADAPTVTSPP TDAATSISPP GKPASVEATA EAPAVSIPAP
PPAGAPPAAP VGGAQRQRSM LIGGIIAAIV LLLACVGGGY FALGAVGLLP GSATAVSGVS
PAPQATRTPA TGGSAATAEA RQNATATAIA IAQRATGTAR AEGQTTTAQA GQSSEQQTAT
AMARQTVAVA AQQTAAAIAA ATQTAAVPTA TPAPQSLIPQ PGALSLADYQ AQTRGLRQLL
FETFDRGERT KAIWTQVDNE RRRAALRDNL YYLTVKTPDL TTWYTWSRDL GNTYNIELSV
AFQTVGAPAS VGIAFDVQPD ANSGLFFEVT SDKRWLFSTV VDGQFITEGS TGLIPDEIIV
DGVGTNVLWV VRTPSEIQLW INSKHVATLP PSPFPGGQAG VCASSFSGLT EPATVIVDNF
RARAP
|
|---|
| |