Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0370 |
Symbol | |
ID | 5537832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 461025 |
End bp | 462584 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640892533 |
Product | integral membrane protein MviN |
Protein accession | YP_001430520 |
Protein GI | 156740391 |
COG category | [R] General function prediction only |
COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.601407 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.501558 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCGGCG CTTCGGGTGC GGTTGTTCGC CGCGTCGCAA CCGCCGCACT CCTGATCGCG GCTGGCAATA TCGCCAGTCG TCTGATTGGC GTCGTGCGCG AAGCGGTCAT TGCTGGTCTC TTCGGGCGCG GCGCAGATGT CGCCGCCTTT ACCGCCGCCT CCGCCGTTCC CACGATTGTC TACGATCTCC TGGTTAATGG CGCGATCAGC GCGGCGCTCG TGCCGGTGTT CAGCGCCTAC GCCGAGGAGG ACGAAACTGC TTTCTGGCGT GTCGCCGCGA CCGTCATCAA TCTGGCGTTG GGATCAATCG CCCTGACCGT CGGGTTTCTT ATCTGGCAAA CGCCAACGGT TGTGATGCTG CTGGCAGGCG GGTTTGAGCC GGAACTGCGC GAACTGACTA TCGTGATGAC CCGTCTGCTC CTGCCGTCGG TCTTCTTTAT GGGTCTTTCG GGATTGATCA CCGCGCTGCT CTATGCGCGG CAGCGGTTCC TCCTTCCGGC ATTTACCACC AGTATCTTCA ATCTGGGAAT CATCCTTGGC GCGGTTCTGC TGCAAGCATG GCTCGGTCCG CTTAGCCTGG TCGTTGGCGT GCTGCTTGGC TCGGTCTTGC AAGTGGCGCT GCAACTTCCC GGTCTCCGTG ATGCGACGCA TGTGCCGTTC CTGACGTTTG ACCTTGCGCA TCCCGGTGTG CGCCGGATTC TCGCGCTTTA TGCGCCGGTT GCGCTGGGGA TCGGTTTCTC AATCGCTGGT ATTGTCATTG ATCGCAATCT GGCGTCGCGC CTGACGCCGG ATGCCATCCC GACGATGCGC TATGCTACGG CGCTCATCCA GTTCCCCCTC GGTCTGGTTG CCGCAGCCGT GTCGTTCGCT GTGCTTCCGA CCCTTTCGCG TCAGGCGAGC GCCGGTGATG AAGCGGCGTT TCGCGTCACT CTGGCGATGG GGATCAAGGT CGTACTGCTG CTCATCCTCC CGGCGACCGC CGCTCTCGCG GCGCTGGGGG CGCCGGTCGT CGCGCTGCTT TATCAGCGCG GCGCCTTTGG CGGCGAGGAT ACACAGGCGA CCGCACGCGC CTTGCTGCTC TACCTGCCTG GATTGCCCGC AGCCGCGCTC GATCAGATGA TCTTGTTTGC GTTCTATGCG CGCCAGCGTA CTCTGACGCC GAATCTGGTG CAGGGGGCGG CCATCCTGAT CTACGCGGCG ACTGCGCTGC CGCTGCTGAT GTGGACGCCG CTGGGGGTGG CGGCGCTCAT TCTGGCGAAT TCGGCGCAGT GGATCGGGCA TGCGCTGATC CTCTACCTCC TCTCGCAGCG CCTGGTGGAT CTCGGTGGTC TGCGCATCGG CGAAACCTTC TGGAAATGTC TGATCGCCTG CATAGCGCTC TTTTGTGTGG CATGGTGGCT GGGCAATGCG CTTGCGTTCG CCGGTCCGCT GGCGGTATTG CTGGGCGCAG GTGGGCTTGG AACGCTGACA TATGCCGGTG TCTGCCTGGC GCTGCGCGTC GAGGCGCTCG ACTTCCTGAT AACCACCCTG CGACAGCGGG GATTCTTCCC TACCGCATAA
|
Protein sequence | MSGASGAVVR RVATAALLIA AGNIASRLIG VVREAVIAGL FGRGADVAAF TAASAVPTIV YDLLVNGAIS AALVPVFSAY AEEDETAFWR VAATVINLAL GSIALTVGFL IWQTPTVVML LAGGFEPELR ELTIVMTRLL LPSVFFMGLS GLITALLYAR QRFLLPAFTT SIFNLGIILG AVLLQAWLGP LSLVVGVLLG SVLQVALQLP GLRDATHVPF LTFDLAHPGV RRILALYAPV ALGIGFSIAG IVIDRNLASR LTPDAIPTMR YATALIQFPL GLVAAAVSFA VLPTLSRQAS AGDEAAFRVT LAMGIKVVLL LILPATAALA ALGAPVVALL YQRGAFGGED TQATARALLL YLPGLPAAAL DQMILFAFYA RQRTLTPNLV QGAAILIYAA TALPLLMWTP LGVAALILAN SAQWIGHALI LYLLSQRLVD LGGLRIGETF WKCLIACIAL FCVAWWLGNA LAFAGPLAVL LGAGGLGTLT YAGVCLALRV EALDFLITTL RQRGFFPTA
|
| |