| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0257 |
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| Symbol | |
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| ID | 5537719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 315712 |
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| End bp | 317337 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640892421 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001430408 |
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| Protein GI | 156740279 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.201917 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAAG CGAACGAGCC ACTTCTGGAA GATGATCTGC TGCTCGACGA TCTGGACGAT
GACATGACCG GCGCTTCCCG TGAACCCGAA GAGGAGCCGC AGACGATCAC AAGTCTAAGT
GATCTGCTGG CAATCGGCAA ACAGCGCGGT TTTGTCACCG AGGGAGAAAT TGCGCAACTG
CTTGCAGGCA GCGACGCCGA TAGCGACCGT CTGGCGGAAA TTCAACAGGC GCTTCAGTCG
GCAGGCATTG CCACGCGCGA TGAGATGATT GCCGGCGGCG CCGAGATCGA TGTGCACTTC
GAGGAGGAAG GCGATCTTGA CGACTTGAGC GTCGAGGGCA TCAGCATCAA CGATACGGTG
CGCATGTATC TGCGCGAGAT TGGACGGGTG CCGCTCCTGA CCGCGCGCCA GGAAACGCTG
CTGGCGCAGA AGATCGAGAT CGGCGAATAT CTGGAGTCGT ACCGCACCCA ACTGGCGGCG
GACTGGCGCC CTGAGCAGAT CGACTCTGTT GGCGCACAAA TGTATCAGCG CCTGCAAAAA
ACCTGGCCCG TGGTTGAGGA TGCCATTCGA TTGCTCTACG CGATTGTCGA GCAACCGTTG
CCCGATCCGC TGACCCCCGG TTGCCTGCGC GAGGTCTCCG CCATTCAGGA ACGTATGACG
TTTGAGCAGC GGCAGATGTT CGACAAGCGC CGCAATGAGT TGATCAAACA GCACCGGATG
ACGGCAGAAC AGTTTGATCA GACGTTCGCT CAGGCGACGA TTATCTTTTC GCTTCTGCCT
GCCGCCGTTC AGCAACGGCT GGCGCTATCC GCCAACTGGC CCTCCGTCGA GGAAGTGCAG
CACATGTGCG CCGATGTGCG CGATCAACTC TGGCGCGATT GGAATCTTGC GATTGAGCAG
GGCAAAACAG CGCGCGAGGA TTTGACCCAG GCAAATCTCC GGTTGGTCGT GTCGGTGGCG
AAGAAGTATA TCGGGCGTGG GTTACAACTC CTCGACCTGA TTCAGGAGGG GAATGTCGGG
CTGATCCGCG CGGTCGAAAA GTTCGACTAT CGCAAAGGGT TCAAGTTCTC GACCTACGCA
ACCTGGTGGA TTCGCCAGGC GATCACGCGC GCCATTGCCG ATCAGGCGCG CACTATTCGG
ATTCCGGTGC ATATGGTCGA GACCATCAAT CGCCTGATGC GTGAAAGCCG CCGCATGCTC
CAGGAGTTGG GGCGCGAACC AACCGACGAG GAGTTGTCGC GCGCATTGGG CATCCCGGTG
GATAAAGTGC GTTCGATCCG TAAAACGTCG CTCGAACCGG TCTCGCTCGA GACGCCGGTC
GGGCAGGAGG AAGACAGTCA ACTCGGCGAT TTTATCGAAG ACTCAAAAGT GCTTGCGCCT
TCCGACGCCG CCAGCCATCA GATGCTGCGT GAGCAGGTCG AACAGGTGCT GAATCAGCTC
ACAGAACGCG AACGTCGTGT CCTCCAATTG CGGTTTGGTC TTGAAGATGG TCACAGCCGC
ACCCTCGAGG AGGTTGGCAA GGAGTTCGGC GTGACTCGTG AGCGTATCCG CCAGATTGAG
GTGAAAGCGC TGCGAAAACT GCGTCATCCT CGCCTCGGCA AGAAACTTCG CGATTATCTT
GAATAA
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| Protein sequence | MEQANEPLLE DDLLLDDLDD DMTGASREPE EEPQTITSLS DLLAIGKQRG FVTEGEIAQL
LAGSDADSDR LAEIQQALQS AGIATRDEMI AGGAEIDVHF EEEGDLDDLS VEGISINDTV
RMYLREIGRV PLLTARQETL LAQKIEIGEY LESYRTQLAA DWRPEQIDSV GAQMYQRLQK
TWPVVEDAIR LLYAIVEQPL PDPLTPGCLR EVSAIQERMT FEQRQMFDKR RNELIKQHRM
TAEQFDQTFA QATIIFSLLP AAVQQRLALS ANWPSVEEVQ HMCADVRDQL WRDWNLAIEQ
GKTAREDLTQ ANLRLVVSVA KKYIGRGLQL LDLIQEGNVG LIRAVEKFDY RKGFKFSTYA
TWWIRQAITR AIADQARTIR IPVHMVETIN RLMRESRRML QELGREPTDE ELSRALGIPV
DKVRSIRKTS LEPVSLETPV GQEEDSQLGD FIEDSKVLAP SDAASHQMLR EQVEQVLNQL
TERERRVLQL RFGLEDGHSR TLEEVGKEFG VTRERIRQIE VKALRKLRHP RLGKKLRDYL
E
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