Gene Rcas_0219 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0219 
Symbol 
ID5537681 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp277462 
End bp277938 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content64% 
IMG OID640892383 
ProductNUDIX hydrolase 
Protein accessionYP_001430370 
Protein GI156740241 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1051] ADP-ribose pyrophosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.203556 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.450694 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTATGA CGATTAATTA CACGGCATGG CTGCGCAGTT ATGTTGGTCA CCAGCGCCTG 
CTGCAACTTG CTGCGAGCGC ATTCATTCGC AATGATCGGG GACATGTGCT GCTCGGTCAG
CGCTCCGATG TGATGCTGTG GGCGCCACCG TCCGGCGTGG TGCAACTTGG CGAAACGCCG
GCGCGCACCC TGGTGCGCGA AGTGCTCGAA GAGACCGGAC TGCACGTCGT GGTCGAGCGC
CTGATCGGGC TGTACACCGG GCGCGAATTC GAGTGGACCT ACCCGAACGG CGATCAGGCG
CAGATCGTCA GCGCCTTCTT CGCCTGCCGC GTCACCGGAG GCATGCTGCA ACCGGACCAT
ACGGAGTTTG TGTCGCTCGC CTATTACCCA CCCGACCGCC TGCCGCCGCT GATGCCGCGC
TATGTGCGCA TGGTGCGCGA TGCGTTCGCC GGGCGCGCGG AAGCGGCGTT CGATTAG
 
Protein sequence
MPMTINYTAW LRSYVGHQRL LQLAASAFIR NDRGHVLLGQ RSDVMLWAPP SGVVQLGETP 
ARTLVREVLE ETGLHVVVER LIGLYTGREF EWTYPNGDQA QIVSAFFACR VTGGMLQPDH
TEFVSLAYYP PDRLPPLMPR YVRMVRDAFA GRAEAAFD