Gene Rcas_0146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0146 
Symbol 
ID5537606 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp176009 
End bp176964 
Gene Length956 bp 
Protein Length318 aa 
Translation table11 
GC content63% 
IMG OID640892310 
Producttransposase 
Protein accessionYP_001430299 
Protein GI156740170 
COG category[L] Replication, recombination and repair 
COG ID[COG3415] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.991618 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCAT TTTCAATCGA TCTCCGTATC CGCGTCCTGG CGGCGCTCGA TGGTGGGATG 
TCCCGTTCGG AGGCCGTGCG GCTCTTCCAG GTGAGTCTGG GCAGTATCAA ACGCTGGCTG
CGTGCTCGTG CGGCCGACGA CCTCGCCCCA AAACGCCCCA CGGGACGTCC GCGCCGGATT
ACCCCAACGC AGGAACAGCA GTTGCGCGTC CAGGTGCAGA TCACCCCCGA TGCGACGCTC
GACGAACATG CCGCGCAGTG GGCGGCCGAT ACCGGCAGGC GCATCAGTCG CCAGACCCTC
GGACGCGCCC TGCACCGCCT GGGCCTGTCA CGCAAAAAAA GTCGACCGTT GCCAGCGAGC
GCGACCCCTG GGAACGTGCG GCGTTTGCAC TCCGGCAAGG CGACTGGGAC GCCAACGACT
TGATCGTGTT GGATGAGTTT GGCAGCAACC CTGATCTGGA ACGCACCCAT GCGTGGGCAC
CGGTGGGGGA ACGTGCGACC AGCGCCATTC CCCACAACAC GCCTATCAAC ACGACGACGA
TTGCCGCGCT GACGCCAACC AGGATGGGAC CGGCACTGGT GTTGGCGAGC GGGGTTGATC
GTGCAGCGTT CACCGCCTAT TTGGAGCACG TTTTGGCACC AACGCTCCGG CCGGGGCAGA
TTGTGTTGGC GAATAACCAC AGCGCGCACA AGAGTCCGCA GGCGCATGCC ATCGTGGCGG
CCCGTGGCTG CACGTTGCGG TTTCTGCCCG CCTATTCGCC CGACTACTCG CCAATCGAGT
TGGAGATCGC GAAGATCAAA GCGCTGCTGC GGCGTGCGGC CGCCCGAACA ACCGAAGCGT
TGGAAGCCGC CATCGCCGCC GCCTTGTCGG CGGTGACTGC CGCCGAAGCA CAGGCATTCG
TTCGCCATTG TGGCTACCGA TTTCCACCAA ATTTGGATCA ATGGTTTTGC ACTTAG
 
Protein sequence
MKAFSIDLRI RVLAALDGGM SRSEAVRLFQ VSLGSIKRWL RARAADDLAP KRPTGRPRRI 
TPTQEQQLRV QVQITPDATL DEHAAQWAAD TGRRISRQTL GRALHRLGLS RKKKSTVASE
RDPWERAAFA LRQGDWDAND LIVLDEFGSN PDLERTHAWA PVGERATSAI PHNTPINTTT
IAALTPTRMG PALVLASGVD RAAFTAYLEH VLAPTLRPGQ IVLANNHSAH KSPQAHAIVA
ARGCTLRFLP AYSPDYSPIE LEIAKIKALL RRAAARTTEA LEAAIAAALS AVTAAEAQAF
VRHCGYRFPP NLDQWFCT