Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0146 |
Symbol | |
ID | 5537606 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 176009 |
End bp | 176964 |
Gene Length | 956 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640892310 |
Product | transposase |
Protein accession | YP_001430299 |
Protein GI | 156740170 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3415] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.991618 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCAT TTTCAATCGA TCTCCGTATC CGCGTCCTGG CGGCGCTCGA TGGTGGGATG TCCCGTTCGG AGGCCGTGCG GCTCTTCCAG GTGAGTCTGG GCAGTATCAA ACGCTGGCTG CGTGCTCGTG CGGCCGACGA CCTCGCCCCA AAACGCCCCA CGGGACGTCC GCGCCGGATT ACCCCAACGC AGGAACAGCA GTTGCGCGTC CAGGTGCAGA TCACCCCCGA TGCGACGCTC GACGAACATG CCGCGCAGTG GGCGGCCGAT ACCGGCAGGC GCATCAGTCG CCAGACCCTC GGACGCGCCC TGCACCGCCT GGGCCTGTCA CGCAAAAAAA GTCGACCGTT GCCAGCGAGC GCGACCCCTG GGAACGTGCG GCGTTTGCAC TCCGGCAAGG CGACTGGGAC GCCAACGACT TGATCGTGTT GGATGAGTTT GGCAGCAACC CTGATCTGGA ACGCACCCAT GCGTGGGCAC CGGTGGGGGA ACGTGCGACC AGCGCCATTC CCCACAACAC GCCTATCAAC ACGACGACGA TTGCCGCGCT GACGCCAACC AGGATGGGAC CGGCACTGGT GTTGGCGAGC GGGGTTGATC GTGCAGCGTT CACCGCCTAT TTGGAGCACG TTTTGGCACC AACGCTCCGG CCGGGGCAGA TTGTGTTGGC GAATAACCAC AGCGCGCACA AGAGTCCGCA GGCGCATGCC ATCGTGGCGG CCCGTGGCTG CACGTTGCGG TTTCTGCCCG CCTATTCGCC CGACTACTCG CCAATCGAGT TGGAGATCGC GAAGATCAAA GCGCTGCTGC GGCGTGCGGC CGCCCGAACA ACCGAAGCGT TGGAAGCCGC CATCGCCGCC GCCTTGTCGG CGGTGACTGC CGCCGAAGCA CAGGCATTCG TTCGCCATTG TGGCTACCGA TTTCCACCAA ATTTGGATCA ATGGTTTTGC ACTTAG
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Protein sequence | MKAFSIDLRI RVLAALDGGM SRSEAVRLFQ VSLGSIKRWL RARAADDLAP KRPTGRPRRI TPTQEQQLRV QVQITPDATL DEHAAQWAAD TGRRISRQTL GRALHRLGLS RKKKSTVASE RDPWERAAFA LRQGDWDAND LIVLDEFGSN PDLERTHAWA PVGERATSAI PHNTPINTTT IAALTPTRMG PALVLASGVD RAAFTAYLEH VLAPTLRPGQ IVLANNHSAH KSPQAHAIVA ARGCTLRFLP AYSPDYSPIE LEIAKIKALL RRAAARTTEA LEAAIAAALS AVTAAEAQAF VRHCGYRFPP NLDQWFCT
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