| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0129 |
|---|
| Symbol | |
|---|
| ID | 5537589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 156492 |
|---|
| End bp | 158132 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640892294 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001430283 |
|---|
| Protein GI | 156740154 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCAGGAC GTTCGCAATC AATCGCAGCT CCAAGAGCCT TCGCCCGCAA AGCGACTGGT
CTGGTGCGTC AGGCGGGGAT GATCGACGTA CTGGTGTACA ACGTCAATTT CATCAGCATT
GGGTTGATGG TCGCACTGAT GCTCCTGATC ATTCCGTCGT ATGCGGGCGG CAACATCTAT
CTTTCATTGC TGTTCTGTGC ATTGCTGGCG TTGCCAACCG CATGCGTCTA TGCATTCCTC
TCCGCCGCCA TGCCGCGCAG CGGCGGCGAC TATGTGTACG TCAGTCGTGT GCTGGGTCCG
GCGCTAGGCA TGATGGGCAG CTGGAATATG ACGATCTGGT GGATTCTGTA CGGCGGCGTG
CCATCGGCAT TTCTGGCAAC CTATGGCGTG GCGCCGTTCT GTCGCGTGCT TGCGGCAATG
ACCGGTAACG CCACGCTCAT CGGAGTCGCA GACTGGACGG TGACTCCTAC CGGGCAGTTT
GTCGTCGGCG CTCTCCTGAT CCTGATTTTG ACCACATTGT TCACTATCGG GCTGAAGTCG
TTCTTCCGCG TGCAGAATAT CCTCTTTCTG TTGGCGACGT TGAGTGCGTT CGTGGCGCTG
ATTGTCGGAT TGACTGCGAA CGCTGCCGCG TTTCCCGATG TGTTCAACCG CTATGTCGGC
GCGCTGAACG GGCAGCCCGA CACCTACCAG CAGATCGTCA ACGCCAGCGG TTATGCCGCT
GCGCCGTTCG ACTGGATGAA TACGCTGTTG CCGATGACCT GGATTTACCT GACGATGGGG
TTCAGTTTCT CTTCGGCGTA CATCGGTGGC GAAGTGAAAC AGGCGGCGCG GTTGCAGACG
TGGGCGATTC CCGGTACGGT TATCTATGCT GCGGTGTGGG GTTTCCTGCT GGTATGGGCG
ACGACGCGCG CCGTCGGCGC GGATTTCCTT GGCGCTGTGA GCACACTTGG CGATCTGGGG
GCGGAGAGTG TCGGCTTGAG CGCGATGCCG CGTTTCCACG AGTTGATCGC CTACGCGAGC
CAGAACCCGC TGGTTGCGTT CCTGATCTGC TTCGGGTTCA TTTTCTGGTC CTACGCCTGG
TTGCCGGGGC AGATCTTGAA TGCGTCACGC AACCTGCTGG CATATGCGGT CGATGGGTTG
ATGCCCGCGC GCCTGGCGAC TGTCAGCGAG CGCTTCCACA CGCCGGTCGT CAGTCTGTGG
ATTATGGGGA TCCTGTCGAT TGTATCGCTG GCGATTTACG TGTTCACGCC ATACTTTGCA
ACGCTCTCCG GCATCTTTGG GTTCATCCTG ACCTTCATGC TGGTGTCGCT GGCGGCGGTT
CTGCTCCCGT ATCGGCGTCC CGAAGTGTTT GAGGGGTCGC CGGTGAAATG GCGGGTGGCG
GGCGTGCCGG TGATCAGCAT TGTCGGCGTG CTGTCGCTCG CGGCATGCAC CGTGATGGAA
TGGGCGTATC TGAACGATCC CTTCTCCGGC ATCAGCCTCG ATCCTTCGAC ACTGAGCGAA
GGGGTGCTGG GGTTTGGTAT GTTCTTGATC AACATCGGCA TCTTTCTTTC TGGGTTGATC
GTCTACGTTG TTGCACAGGC GATCCGGCGG CGCGCGGGGA TCGATGTGTC ACTCAATTAT
AAGGACATAC CCGTCGAGTA G
|
|---|
| Protein sequence | MAGRSQSIAA PRAFARKATG LVRQAGMIDV LVYNVNFISI GLMVALMLLI IPSYAGGNIY
LSLLFCALLA LPTACVYAFL SAAMPRSGGD YVYVSRVLGP ALGMMGSWNM TIWWILYGGV
PSAFLATYGV APFCRVLAAM TGNATLIGVA DWTVTPTGQF VVGALLILIL TTLFTIGLKS
FFRVQNILFL LATLSAFVAL IVGLTANAAA FPDVFNRYVG ALNGQPDTYQ QIVNASGYAA
APFDWMNTLL PMTWIYLTMG FSFSSAYIGG EVKQAARLQT WAIPGTVIYA AVWGFLLVWA
TTRAVGADFL GAVSTLGDLG AESVGLSAMP RFHELIAYAS QNPLVAFLIC FGFIFWSYAW
LPGQILNASR NLLAYAVDGL MPARLATVSE RFHTPVVSLW IMGILSIVSL AIYVFTPYFA
TLSGIFGFIL TFMLVSLAAV LLPYRRPEVF EGSPVKWRVA GVPVISIVGV LSLAACTVME
WAYLNDPFSG ISLDPSTLSE GVLGFGMFLI NIGIFLSGLI VYVVAQAIRR RAGIDVSLNY
KDIPVE
|
|---|
| |