Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp1003 |
Symbol | xpsR |
ID | 1223315 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 1264272 |
End bp | 1265192 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637240868 |
Product | transcription regulator XpsR transcription regulator protein |
Protein accession | NP_522564 |
Protein GI | 17549224 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0016444 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGAACAGA AGCTCATCTT CTCGCGCGAA CAATTGGACA AGTACTTTGC TTCCTATGTC GGCATGGAGG GGGGCAACCC CGCCGGGGCT GTCTGGTTCT GCGACAGGGA TCCGCACCCA TGGACAGAGT CGCTGGTTGC CCCGCTGGGG CCGCGTGAGC AGCCCAACGC CTGGGGCACG GTCTTCCGCG CACGCAACCG GGACAGCATG GAGCGGTGGC AATCGCATCA GAAGATCGCG CGGATCATGG CGGCCGCGCG TGCGGAGACC CATCGGCGGC CGCAGAGCGA ATGCGACTGG AAGCATTACT TTGCGGACCT GCTCTATGCG CCGAACGGCG CCGAGTTCAA GCTCAGCCTG TTTCCGCTGC CCGCGCAGCA GATCGGCGAC ACGCCCTGGT CGCGGGCATT CCGCGGGCAG CCGGCGCTGG TTCCGAAGCA GCGCTATGTC GATCTGTGCC GGACCGGAAG CCGGTTCCGC TTCATCTCGA AGATCCGGGA ACGCTGGAGG CCCAAGATCG TGCTGTGCTT CGGCGAGCGG CACATGGACG ACTACGTGCA AGCCTTCGGC CTGCAGGCGG CCGCAACCCG CCAGTTCATT CTTCAGCCGG CCGATCTCGC CAAGACGCTG CAGGTGCTCG AGCACGACGG CACCACCTGG ATCATCAGTC CGCCGCTGGC CGGCGCTTCG GGGCTGACTT CCGACGTGCT GCTCGAAGCG ATGGGGCGCT ATATCGCGCG TTGGCTGGCG CCGGCCGATT TTCCCCGGCT GCAGGAAAGC AGCGGGGTCA GCCTGCTCAC GAAGGAACGG GAGGATCCGT TCGGCGACGG CCGGGGAGGC CGAGCAACGT ACCCGGCAAC CGGACGCGTA CCGTTTCCGC CGCCAGGCAG GGACGACATC GCTGGGCGGG TTGCTTACTG A
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Protein sequence | MEQKLIFSRE QLDKYFASYV GMEGGNPAGA VWFCDRDPHP WTESLVAPLG PREQPNAWGT VFRARNRDSM ERWQSHQKIA RIMAAARAET HRRPQSECDW KHYFADLLYA PNGAEFKLSL FPLPAQQIGD TPWSRAFRGQ PALVPKQRYV DLCRTGSRFR FISKIRERWR PKIVLCFGER HMDDYVQAFG LQAAATRQFI LQPADLAKTL QVLEHDGTTW IISPPLAGAS GLTSDVLLEA MGRYIARWLA PADFPRLQES SGVSLLTKER EDPFGDGRGG RATYPATGRV PFPPPGRDDI AGRVAY
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