Gene RSp0868 details

Gene Information

• Locus tag: RSp0868
• Symbol: hrpH
• ID: 1223175
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: +
• Start bp: 1094782
• End bp: 1095411
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 637240728
• Product: HRPH protein
• Protein accession: NP_522429
• Protein GI: 17549089
• TIGRFAM ID: [TIGR02560] type III secretion protein HrpB4

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.509019
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 6
• Fosmid unclonability p-value: 0.00127676
• Fosmid Hitchhiker: No
• Fosmid clonability: decreased coverage

Sequence

Gene sequence

ATGACCGCCG CCGCCATGAT GCCGGATCAG GCAGACACCA TGATCCTGCG CATCCTCCAC 
GCCTACCAGA CGCGGCTGCA GGGCCTGCCG CGCACGCTGG ACAGCCGGGC GTGGTCGGAA 
TGCGCGCATG GCCTGTCCGC CGATGCCGCG TCATGGCGCG ACGCCTGCGA CGTGCTGGGG 
CTGCGATCGG TGGCGCTGCA GACCCTGCTG GAGCGCGCGC ATCGGCTGGC GGTGCTCGAA 
GCGGGCGACC TGCGCCGCGT GCTGGCCGGT CGTGCGCTCT ATGCGCGGCG CACGGCGCTG 
GCGCGCTGCA TCGACGGCGC GTACCTGTCG CGGCTCAACG CGGCGGTGGG CACCGCGCTC 
GTGAGCGCCA TGGCGGCGCG CGCCGACTGG CAGCCGGACG CCGGCGGCCC GCTGCCGCGC 
CCCGAGCTGC AGGCGCTGGC CCACGCCGGC CTGGTCGCGC TGGTGTCCGA CGGCTGGCTG 
ACCGATCCGT CGCTGATCCG CCTGATGCGG ATGACCCTCG GCGCCGCGCC CACCGGACGG 
GTCGGGCCGC CCGCGCTGAC GCCGCTGTCC GAGTCGTTCA TCACGGCGGT TCCCTCGATC 
TATCCGGAGT TGTCATGGTT ATTTGGCTGA 

 

Protein sequence

MTAAAMMPDQ ADTMILRILH AYQTRLQGLP RTLDSRAWSE CAHGLSADAA SWRDACDVLG 
LRSVALQTLL ERAHRLAVLE AGDLRRVLAG RALYARRTAL ARCIDGAYLS RLNAAVGTAL 
VSAMAARADW QPDAGGPLPR PELQALAHAG LVALVSDGWL TDPSLIRLMR MTLGAAPTGR 
VGPPALTPLS ESFITAVPSI YPELSWLFG