Gene RSp0849 details

Gene Information

• Locus tag: RSp0849
• Symbol: prhI
• ID: 1223156
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: +
• Start bp: 1080267
• End bp: 1080776
• Gene Length: 510 bp
• Protein Length: 169 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637240709
• Product: RNA polymerase sigma factor
• Protein accession: NP_522410
• Protein GI: 17549070
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.121371
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.75783
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCAACAAG CCTGCCTGCC TGCCACCGAA GTGGCTTCCG ACTGGTTTCG ACAACATTAC 
GCCTGGCTGG CCGGCCGCAT GGGGCGTAAG ACGGGCTGCC GTTTCGGGGC GGAAGACCTC 
GCATCGGAGG CGTTCGCGCA GCTGCTGCAG ATGCCGGACT GGCAGGGCAC CCGCGAGCCG 
CGCGCGCTGC TGACCACCAT CGCGCAGCGG CTGCTGTACG ACATCTGGCG CCGGCGCGAT 
CTGGAGCTGG CCTACCAGGC GTGGGCCGCG GCGCAGCCCG AAGCCACGCT GCCGTCGCCC 
GAGGAGCGGG CGCTGGTGCT GGAGGCCCTG GCCACCATCG ACCGGCTGCT TGATGGCCTG 
CCCGTCAAGG CGCGCACGGC ATTCCTGTAC AGCCAGCTCG ACGGCCTGAC CTACCCCGAG 
ATCGCTGGGC GGCTGAACGT TTCGGTGCGC ATGGTGCAGA AGTACATGAC CCAGGCGATG 
CGCCTGTGCT ACCTGGCAGG CGTGTCGTGA 

 

Protein sequence

MQQACLPATE VASDWFRQHY AWLAGRMGRK TGCRFGAEDL ASEAFAQLLQ MPDWQGTREP 
RALLTTIAQR LLYDIWRRRD LELAYQAWAA AQPEATLPSP EERALVLEAL ATIDRLLDGL 
PVKARTAFLY SQLDGLTYPE IAGRLNVSVR MVQKYMTQAM RLCYLAGVS