| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0507 |
|---|
| Symbol | cheD1 |
|---|
| ID | 1222814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 628630 |
|---|
| End bp | 630432 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637240367 |
|---|
| Product | methyl-accepting chemotaxis I |
|---|
| Protein accession | NP_522068 |
|---|
| Protein GI | 17548728 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACC GACTTTCCAT CCGCTTCCGA CTCAACGCCG CCCTTGTGCT GCTTGGCGCA
CTGCTCGCCA TCATCGGCAC CATCGGCGTG ATCGGCATGC GCGCCTCCGA CGCGAACATC
CGCGAGATCT ACAGCAATCA GCTCGCCTCG ACCTCGCTGG TCTCCAAGGC CCAGCTGAAC
GCCGCCGTGA TCCGGACCAC GCTGGACCGC GCGGTGTTCC ATATCGATGC TGCCGATGTG
CCGGCCGTCA TCGACAAGGC CGCCGCGTAC CGCGCCAAGT CCGAGGACGC CTGGAAACAG
TACAAGGGCC TGCCGATGAG CGCCGACGAG GCCCGCCTGG CCGCCGACGT CGACGCCAAG
CGCACCACCC TGTTCCGCGA CGGCATCGAG CCGCTGGTCA CCGCGCTGCG TGCTCGCGAT
GCCGCCGCCG TCGACAAGGC GGTGATGACC GTGATTCCGC CGATGTTCGT CGCGCTGTCG
GCCGCCGTGG ATGCGCTGGA CCGCAACCAG GCCGAACAGG CCAAGGCTGC CTACGAGGGG
GCTGTGACGC GTTCGCAGAA CTTCCTGTGG CTGATCATCG GTGCCATCGT GGTGGGGATT
CTCTCGGCGG TGGCCTGTGC GTTCGGCCTG GACCGGGCGA TCTCGGTGCC GCTGAGCCGC
ATGCTCGGCA GTTTCGGTGA GATCTCGCGT GGCAACCTCA CCGAGCAGAT CGTCGTCACC
AGCCAGGACG AGATGGGCGC GCTCACGCGC GGCTTGCAGG ACATGCAGCG CGGGCTGATC
CGGACCATCG AGACGATGCG CGGCGGCAGC GATTCGATCG CCAGCGCCAC CAAGCAGATC
GCGGCCGGCA ACATGGATCT GTCGCAGCGC ACGGAAGAGC AGGCCAGCTC GCTGGAAGAA
ACGGCCTCCA GCATGGAAGA GCTGACCTCG ATCGTGAAGC AGAACGCGGA CAACGCGCGC
CAGGCGAGCA CGCTGGCGGT CAACGCTTCG GACATCGCGG TCAAGGGCGG CGAGGTGGTG
GGCCGCGTGG TCGAGACCAT GGCCGGCATC AACGACAGCA GCAAGAAGAT CGCTGACATC
ATCGGCGTGA TCGAGGGCAT TGCATTCCAG ACCAACATCC TGGCGCTGAA CGCGGCGGTG
GAAGCGGCCC GGGCCGGTGA GCAGGGGCGT GGCTTCGCGG TGGTGGCGGG CGAGGTGCGC
AGCCTGGCGC AGCGCTCGGC GGGGGCGGCC AAGGAGATCA AGGAGCTGAT CTCGGACTCG
GTCGGCCGGG TCGAGAACGG CACCACGCTG GTGGCCGAGG CCGGCACGGT GATCGACGAA
GTGGTGGTGG CGGTCAAGCG CGTGACGGAC ATCATGGGCG AGATCAGCGC GGCGTCGGAC
GAGCAGAGCT CGGGCATCGA GCAGGTCAAC CAGGCCGTGA ACCAGATGGA TGAGGTGACG
CAGCAGAACG CGGCACTGGT GGAAGAGGCC GCGGCGGCCG CGCAATCGCT GGAAGAGCAG
GCGCGCCTGC TGCGCGAGAC GGTGGCCTCG TTCCGCCTGC CGCAAGGCGG CGGCGAGGTG
CGTGCCGCCG CGCCGGCCGT GCGTGCCGTG GCGGCGGCCA AGCCTGCCGC AGCGGCGACC
GTCGCCAGGC CGGCGGTCCG CAAGCCGGCT GCAACGGTGC GTGCGCGTGC GCCGCGCAAA
CCCGCTGCCG AGGCACCGGT TGCCAAGGCG GCATCATCGC CGGCGCCGGC GCCGGCGGAA
CCGGCCGGCG GCAAGCTGGC CCTGTCGGCG GCGGTCGATC AGGATGACTG GACCCAGTTC
TGA
|
|---|
| Protein sequence | MLNRLSIRFR LNAALVLLGA LLAIIGTIGV IGMRASDANI REIYSNQLAS TSLVSKAQLN
AAVIRTTLDR AVFHIDAADV PAVIDKAAAY RAKSEDAWKQ YKGLPMSADE ARLAADVDAK
RTTLFRDGIE PLVTALRARD AAAVDKAVMT VIPPMFVALS AAVDALDRNQ AEQAKAAYEG
AVTRSQNFLW LIIGAIVVGI LSAVACAFGL DRAISVPLSR MLGSFGEISR GNLTEQIVVT
SQDEMGALTR GLQDMQRGLI RTIETMRGGS DSIASATKQI AAGNMDLSQR TEEQASSLEE
TASSMEELTS IVKQNADNAR QASTLAVNAS DIAVKGGEVV GRVVETMAGI NDSSKKIADI
IGVIEGIAFQ TNILALNAAV EAARAGEQGR GFAVVAGEVR SLAQRSAGAA KEIKELISDS
VGRVENGTTL VAEAGTVIDE VVVAVKRVTD IMGEISAASD EQSSGIEQVN QAVNQMDEVT
QQNAALVEEA AAAAQSLEEQ ARLLRETVAS FRLPQGGGEV RAAAPAVRAV AAAKPAAAAT
VARPAVRKPA ATVRARAPRK PAAEAPVAKA ASSPAPAPAE PAGGKLALSA AVDQDDWTQF
|
|---|
| |