Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp0493 |
Symbol | czcA |
ID | 1222800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 614977 |
End bp | 618171 |
Gene Length | 3195 bp |
Protein Length | 1064 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637240353 |
Product | cation efflux system transmembrane protein |
Protein accession | NP_522054 |
Protein GI | 17548714 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCGAAC GTCTGTTGCG CGCTGTGATC GCTCAGCGCT GGCTGGTGCT GCTGGCCGTG CTGGGCGCCG CGGCGTATGG CGTCTACAGC TATACGCGCT TGTCCATCGA TGCGGTGCCC GACATCACCA ATGTGCAGGT GCAGATCAAC ACGCCGGCGC CGGGCTACTC GCCGCTGGAG ACCGAGCAGC GCATCACCTA TCCGCTGGAG ACGGCGATGG CGGGCCTGCC GAAGCTGGAG CAGACGCGCT CGCTGTCGCG CTACGGTCTG TCGCAGGTGA CGGTGATCTT CAAGGAGGGC ACCGACATCT ACTTCGCCCG CCAACTGGTG AGCGAGCGCC TGCAGGCCGC CAAGGAGCAA CTGCCCGACG GCATCTCGCC GGGCATGGGG CCGGTCTCCA CCGGCCTGGG CGAGATCTAC CTGTGGACCG TCGAAGCCGA CGCCGGCGCG CGCAAGCCCG ACGGCGCCGC CTACACGCCC GCAGACCTGC GCGAGCTGCA GGACTGGGTG ATCCGCCCGC AGATCCGCAA CGTGCCGGGC GTGACGGAGG TCAACACCAT CGGCGGCTTT GCCCGCGAAT TCCTGGTCGC GACCAGCCCG GAGCGGCTGG CCTCGTACAA GCTGACGCTG GCCGATATCG TGACCGCGCT CGAGCGCAAC AACGGGAATG TCGGCGCGGG CTACATCGAG CGCAGGGGCG AGCAGTACCT GGTGCGCGCG CCCGGCCAGC TGCGCGACGC GGCCGACATC GGCAACGTGG TCATCGCCAG CCCCAACGGC ACGCCGGTGC GCCTGCGCGA CGTCGCCGCC ATCGAAAGCG GCAGCGAGCT GCGCACCGGC GCGGCCACCA GCAACGGCCG CGAAGTCGTG CTCGGCACGG CCGTCCTGCT GATGGGGGAG AACAGCCGCA CCGTCGCGCA GGCGGTGGAC AAGCGCATGC GGGAGATCCG CCGCACGCTG CCGGCCGGCG TGCGCGTGGA AACGGTCTAC GACCGCACCG TGCTGGTCGA CAAGGCCATC GCCACCGTCA AGAAGAACCT GCTGGAGGGC GCGATCCTGG TGATGGCGGT GCTGTTCCTC TTCCTCGGCA ACCTGCGCGC GGCGGTGCTG ACGGCGCTGG TGATTCCGCT GTCGATGCTG ATGACCTTCA GCGGCATGGT GTCGGCCAAG GTCAGCGCCA ACCTGATGAG CCTGGGCGCG CTGGACTTCG GCATCATCGT CGACGGCGCG GTGGTGATCG TCGAGAACTG CGTGCGCCGG CTGGCGCATG CGCAGCACGC GCTCGGCCGG CCGCTCACGC GCGCCGAGCG CTTCGAAGAG GTCTTCCAGG CCGCCCGCGA GGCGCGCCGG CCGCTGCTGT ACGGCCAGCT CATCATCATG GTGGTCTACC TGCCGATCTT TGCGCTGTCG GGCGTGGAAG GGAAGATGTT CCATCCGATG GCGATCACGG TGGTGCTGGC GCTGGCCGCG GCCATGGTGC TGTCGATCAC CTTCGTGCCG GCGGCGGTGG CGCTGGGCAT GGGCGAGCGC GTGGCGGAGA AGGAGAACCG CCTGATGGGC TGGGCGCGCC GGATGTACGC GCCGCTGCTG GAGCGTGCGC TGGCCGCACC CGCCGTGGTG CTGACCTTTG CCGCGGTAGC GGTGAGCGTC TCGCTGGTCG CGGCCCTGCG CCTGGGGGCC GAGTTCGTGC CCAACCTGAA CGAAGGCGAC TTCTCCATCC AGGCCATGCG GGTGCCCGGC ACGGGCCTGG CGCAGTCGCT CGAGATGCAG ATGCAGATCG AGCGCACGCT CAAGGCGAAG TTTCCCGAGA TCGCGCGCGT GTTCGCCCGC ACCGGCACCG CCGAGATCGC TACCGACGTG ATGCCGCCCA GCATCTCCGA CGGCTACATC ATGCTGCGCC CCGAGCAGGA CTGGCCGGCC GGGCCCGACG GCACGCGGCG CGACCGCGAC CAGCTGCTGG CCGACATCCG CGCCACGGTG GAGACGCTGC CGGGCAATGC CTACGAGTTC TCGCAGCCGA TCCAGCTGCG CTTTAACGAG CTGATCTCGG GTGTGCGCAG CGACGTGGCC GTCAAGCTGT TCGGCGACGA CATGGCCGTG CTGGAGAAGC AGGCCCAGGC CATCGCCGCC CAGCTCGGCC GGCTCGCGGG CGCGGCCGAG GTGAAGATCG AGCAGACCGG CGGCCTGCCG TTCCTCAACA TCGACATCGA TCGCGAGAAG GCGGCGCGCT ACGGGCTGGC CATCGGCGCG ATCCAGGACA CGGTCTCCGC CGCCATCGGC GGCAAGGGCG CGGGCACGGT ATTCCAGGGG GACCGGCGCT TCGGCATCGT CGTGCGCCTG CCGGAAGCGG CGCGCAGCGA TCCGGCCGCG CTGGGCCGCC TGCCGCTCGC GCTGCCCAAC GGCCAGGGCT ACGTGCCGCT GTCGGAGGTC GCCACGCTGC ACGAGGTGAC CGGCCCGAAC CAGGTCAGCC GTGAAGACGG CAAGCGCCGC ATCGTGGTCA GCGCCAACGT GCGCGGGCGC GACATCGCCT CGTTCGTGCA GGAAGCGCAG CGCGCGCTTG ATGCGCAGAT CCGCCTGCCG GCCGGCTACT GGATGGCGTG GGGCGGCCAG TTCGAGCAGC TGCAGTCGGC CACCGAACGG CTGCAGGTGG TGGTGCCGCT GGCGCTCGCG TTGGTGTTCA CGCTGCTGTT CATGATGTTC GGCAACCTGA AGGACGGCCT GCTGGTGTTC TCGGGCATTC CGTTCGCGCT CAGCGGCGGC GTCGTGGCGC TGGCGCTGCG CGGCATTCCG CTGTCGATCT CGGCGGCGGT GGGCTTCATC GCGCTGTCGG GTGTGGCGGT GCTCAACGGG CTGGTGATGC TGAGCTTCAT CCGCAGCCTG CGCGAAGACG GCAAGCCGGT CGACGCGGCG GTGAGGGAAG GGGCGCTGAC GCGCCTGCGC CCGGTGCTGA TGACGGCGCT GGTTGCCTCG CTCGGCTTCG TGCCGATGGC GCTGGCCACC GGGACCGGCG CCGAGGTGCA GCGTCCGCTG GCGACGGTGG TGATCGGCGG GATCCTGTCG TCGACGGCGC TGACGCTGCT GGTGCTGCCG GTGCTGTACC GGCTGGCTTA CCGCCGCGAC AGTCGCGACA GCCGCGACAG CCGCGATGGT GTGGCGGCGC CGGCGGACGC GGCTGCGGCG TCCGCCGTGC GGTAG
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Protein sequence | MFERLLRAVI AQRWLVLLAV LGAAAYGVYS YTRLSIDAVP DITNVQVQIN TPAPGYSPLE TEQRITYPLE TAMAGLPKLE QTRSLSRYGL SQVTVIFKEG TDIYFARQLV SERLQAAKEQ LPDGISPGMG PVSTGLGEIY LWTVEADAGA RKPDGAAYTP ADLRELQDWV IRPQIRNVPG VTEVNTIGGF AREFLVATSP ERLASYKLTL ADIVTALERN NGNVGAGYIE RRGEQYLVRA PGQLRDAADI GNVVIASPNG TPVRLRDVAA IESGSELRTG AATSNGREVV LGTAVLLMGE NSRTVAQAVD KRMREIRRTL PAGVRVETVY DRTVLVDKAI ATVKKNLLEG AILVMAVLFL FLGNLRAAVL TALVIPLSML MTFSGMVSAK VSANLMSLGA LDFGIIVDGA VVIVENCVRR LAHAQHALGR PLTRAERFEE VFQAAREARR PLLYGQLIIM VVYLPIFALS GVEGKMFHPM AITVVLALAA AMVLSITFVP AAVALGMGER VAEKENRLMG WARRMYAPLL ERALAAPAVV LTFAAVAVSV SLVAALRLGA EFVPNLNEGD FSIQAMRVPG TGLAQSLEMQ MQIERTLKAK FPEIARVFAR TGTAEIATDV MPPSISDGYI MLRPEQDWPA GPDGTRRDRD QLLADIRATV ETLPGNAYEF SQPIQLRFNE LISGVRSDVA VKLFGDDMAV LEKQAQAIAA QLGRLAGAAE VKIEQTGGLP FLNIDIDREK AARYGLAIGA IQDTVSAAIG GKGAGTVFQG DRRFGIVVRL PEAARSDPAA LGRLPLALPN GQGYVPLSEV ATLHEVTGPN QVSREDGKRR IVVSANVRGR DIASFVQEAQ RALDAQIRLP AGYWMAWGGQ FEQLQSATER LQVVVPLALA LVFTLLFMMF GNLKDGLLVF SGIPFALSGG VVALALRGIP LSISAAVGFI ALSGVAVLNG LVMLSFIRSL REDGKPVDAA VREGALTRLR PVLMTALVAS LGFVPMALAT GTGAEVQRPL ATVVIGGILS STALTLLVLP VLYRLAYRRD SRDSRDSRDG VAAPADAAAA SAVR
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