| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0303 |
|---|
| Symbol | cheD2 |
|---|
| ID | 1222435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 396481 |
|---|
| End bp | 398028 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637240163 |
|---|
| Product | methyl-accepting chemotaxis transmembrane protein |
|---|
| Protein accession | NP_521864 |
|---|
| Protein GI | 17548524 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0248188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGC TCTCGATCAA GGCCAGGCTG GCCCTGGTGC TCTTCGTTCT GGCTGTCTTC
CTCGCGGGCG TGGGCGCGCT CGGGCTGGTC GGCAATCTGC GCTCTAACGC GGCGCTGAAA
GAAACCTATT CCAACAACCT GGCGTCCACG CGCGCGCTCG GCCTGGCCGA GGCCAAGCTG
GCCCAGGCGC GCACGGCGCT GGACCGCGCC ATCTTCGAAA CCGATCCCGC CAAGACCACC
GATGCCATCA GCCGCATCCA GGCGCAGATC GGCAACAGCG AGAAGGCCTG GGCGGAATAC
CTGAACCTGC CGTTCTCCAC GCCCGAAGAG GAGAAGGTGG CCGGCGAGGC CAAGAAGCAG
CGCGACCTCA TCATCAAGGA CAACATCGCC GCCGCCGTCG AGGCGCTCAA GCGTGGCGAC
AAGGACGCGG CACGCCAGCT GGCGGTGGAG CAGATTCCCT ATAACTTCCG CACCTATGCG
TCGCAGTCCG ACCGGCTCAA CGCGATCCAG ACGGAAGTGT CGGCCGCCTT GTACGAGGCG
TCGCAGTCGT TCTTCAAGGG GCTGGTCTGG ACCTTCGTGA TCGTCATCGC CGCGGGTCTG
GCGCTGGCGG CGGGCTGCTA CCTGATCCTG TCGCGTGCCA TCTCGCTGCC GCTGGCCGAG
ATGCTGGTGC ACTTCCGCGA GATCGCCTCG GGCAACCTGA CGACCGACGT GCGCGTGCGC
TCGCGCGATG AAATGGGCGT GCTGATGGAA GGCCTGCAGC AGATGCAGGA CAAGCTGAAG
GCGACCGTGC TGACGGTGCG CCACGGCAGC GAGTCGATTG CTTCGGCCAC GCAGCAGATC
GCCGCGGGCA ATACCAACCT GTCGCAGCGC ACGGAAGAGC AGGCCAGCTC GCTGGAGGAA
ACCGCGTCGA GCATGGAAGA GCTGACTTCC ATCGTCAAGC AGAACGCCGA CAACGCCCGC
CAGGCCAGCA CGCTGGCCGA GAACGCCTCC GGCATCGCCA TGCAGGGCGG CGCGGTGGTG
CAGGACGTGG TGACGACGAT GGCGCAGATC AGCGAATCGT CGCGCAAGAT CACCGACATC
ATCGCCGTGA TCGAAGGCAT CGCCTTCCAG ACCAACATCC TGGCGCTGAA CGCCGCGGTG
GAAGCGGCGC GGGCCGGCGA GCAGGGGCGC GGCTTCGCGG TGGTGGCCGG CGAAGTGCGC
ACGCTGGCGC AGCGCAGCGC GGGCGCGGCC AAGGAAATCA AATCGCTGAT CGAGGATTCC
GCCACCCGTG TGGAATCGGG GTCGTCGCTG GTGGCGCGTG CCGGCAAGAC GATGGACGAG
ATCGTCGTGG CCGTGAAGCG CGTGACCGAC ATCATGGGCG AGATCAGCGC CGGCTCGGCC
GAGCAAAGCA CCGGCATCGA GCAGATCAAT GAAGCCGTCA CGCAGATGGA CGACGTGACG
CAGCAGAACG CCGCGCTGGT CGAGCAGGCC GCTGCCGCGG CCCAGGCGCT GGAAGAGCAG
GCCGACGAGC TGCGCCGCGC GGTGTCGGTG TTCCGCGTGG CGGCCTGA
|
|---|
| Protein sequence | MKTLSIKARL ALVLFVLAVF LAGVGALGLV GNLRSNAALK ETYSNNLAST RALGLAEAKL
AQARTALDRA IFETDPAKTT DAISRIQAQI GNSEKAWAEY LNLPFSTPEE EKVAGEAKKQ
RDLIIKDNIA AAVEALKRGD KDAARQLAVE QIPYNFRTYA SQSDRLNAIQ TEVSAALYEA
SQSFFKGLVW TFVIVIAAGL ALAAGCYLIL SRAISLPLAE MLVHFREIAS GNLTTDVRVR
SRDEMGVLME GLQQMQDKLK ATVLTVRHGS ESIASATQQI AAGNTNLSQR TEEQASSLEE
TASSMEELTS IVKQNADNAR QASTLAENAS GIAMQGGAVV QDVVTTMAQI SESSRKITDI
IAVIEGIAFQ TNILALNAAV EAARAGEQGR GFAVVAGEVR TLAQRSAGAA KEIKSLIEDS
ATRVESGSSL VARAGKTMDE IVVAVKRVTD IMGEISAGSA EQSTGIEQIN EAVTQMDDVT
QQNAALVEQA AAAAQALEEQ ADELRRAVSV FRVAA
|
|---|
| |