Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp0292 |
Symbol | cyaB |
ID | 1222424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 379620 |
End bp | 381797 |
Gene Length | 2178 bp |
Protein Length | 725 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637240152 |
Product | cyclolysin-type secretion composite ATP-binding transmembrane ABC transporter protein |
Protein accession | NP_521853 |
Protein GI | 17548513 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0404575 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAGCA CCTCCATCGA CACCCCTGCC ACACCAGGGC CCGACCCCAC GCGCGCGGAG AAGATCGACA CCGCCCTGGC CTGCATCCTG ATGATGGCCC GCCTGCACGG CATCGCCGCG GAGGAAGCCC AGTTGCGCCA TGAGTTCGGC CACCGCACGT TCGAGACGCA GACGGCGCTG CTGGCCGCCA AGCATCTGGG CCTGTCGGCC AAGGTGGTGC GCCAGCCGGC GGAGCGGCTG CACCGGGCGC CGCTGCCGGC TATCGCCATC GACCGGTCCG GCCAGCACTT CATCCTGGCC AAGTACGACG CGTCCAATGC CGACGAGCCC AAGCTGCTGG TCCAGCGGCC CGGCCAGCCG CCGAGCGTGC TGACGCTGCA GGACTTTCTC GCGGCGTGGT CGGGTGAGCT GATCCTGTGC ACCAGCAAGG CGAACTTCGC CGGAGACATG GCGAAGTTCG ACTTCACCTG GTTCATTCCC GCCGTCATCA AGTATCGAAA GCTGCTGGGC GAAGTCCTGC TGGTGTCGCT CACGCTGCAG ATCATCGGGC TGGTGACGCC GATGTTCTTC CAGGTGGTGA TGGACAAGGT GCTGGTCAAT CACGCCATGA AGACGCTGAA CGTGATCGCC GTCGGCCTGA TCTGCGCGAT CCTGTTCGAG GTGACGCTCA CCAGCATCCG CACCTGGGTG TTCGCGCATA CCAGCAGCAA GATCGACGTG GAACTCGGCG CGCGGCTGTT CCGGCATCTG CTGAGCCTGC CGCTGGCGTA TTTCCAGTCG CGGCGCGTGG GCGATTCGGT GGCGCGGGTG CGCGAGCTGG AGAACATCCG CAGCTTCCTG ACCGGCAACG CCATGACGGT GGTGCTGGAC CTGCTGTTCT CGTTCGTGTT CCTGGCGGTG ATGCTGTGGT ACAGCGTGTG GCTGACACTG ATCGTGGTGG TGTCGATTCC GCTGTATATC GGGCTGTCGG CGGTGTTCAC GCCCATCATC CGCGCGCGGC TGGACGTGAA GTTCAACCGC AATGCCGAGA ACCAGTCGTT CCTGGTGGAG ACCATCAGCG GCATCGATAC CGTCAAGGCG ATGGCCGTGG AGCCGCGCTG GACGCACAAG TGGGATCAGC AGCTCGCCGC GTACGTCACC GCCGGGCTGG CGGTGACCAA CGTGGCGACG GTCGCCAGCG GCGGCGTCAC GCTGGTCAGC AAGCTGGTGA CGGCGGCCAT CATGTGGCTC GGGGCGACGC TGGTGATCGA CCACAAGATG ACCGTGGGCG AGCTGGTGGC CTTCAACATG CTGGCCGGGC AGGTGTCGTC GCCCATCCTG CGGCTGGCCC AGCTGTGGAA CGATTTCCAG CAGGTGGGGA TTTCGATGAG CCGGCTGGGG GACATCCTGA ACGCGCGCAC CGAGGTCGCC GGCCAGAAAT CGCGCCTGCC GAAACTGGCC GGCGCGATTG CGTTCGACCA GGTGGCCTTC CGCTACCGGC CCGATGCGCC CGATGTCATC CGGGGGATTT CGCTCGCGAT CGCGCCGGGC GAGGTGATCG GCATCGTCGG CCGCTCGGGA TCGGGCAAGA GCACGCTGAC CAAGCTGGTG CAGCGCCTGT ACGTGCCGGA GCGCGGGCGC GTGCTGATCG ACGGGCAGGA CATCGCCATT GTCGATACGA CTTCGCTGCG GCAGCAGATC GGCGTGGTGC TGCAGGAGAA CACGCTGTTC AGCCGCTCCA TCCGCGACAA CATCGCCCTG ACGAATCCGG CGGCGCCGCT GGAGGCCATC ATCGAGGCGG CCAGGCTGGC CGGCGCGCAC GAGTTCATCT GCGAGCTGCC GGAAGGCTAC GACACGATCG TCGGCGAGCA CGGCACCGGC CTGTCGGGCG GGCAGCGCCA GCGCATCGCG ATTGCGCGCG CGCTGCTGAC GAATCCGCGC ATCCTCATCT TCGACGAGGC GACCAGCGCG CTGGACTACG AGTCGGAGAA GATCATCCAG GACAACATGC GGCGCATCTG CCAGGGGCGC ACCGTGCTGA TCATTGCGCA CCGGCTGTCG GCGGTGCGCG AGGCCAACCG CATCATCGTC ATGGAACGCG GCCAGATCGC GGAAATGGGC AGCCATGACC AGTTGCTGAA ACATCCGCAG GGCATCTACG CGCATCTGTA CGCCCTGCAG CAGGGAGGTG CGGCATGA
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Protein sequence | MTSTSIDTPA TPGPDPTRAE KIDTALACIL MMARLHGIAA EEAQLRHEFG HRTFETQTAL LAAKHLGLSA KVVRQPAERL HRAPLPAIAI DRSGQHFILA KYDASNADEP KLLVQRPGQP PSVLTLQDFL AAWSGELILC TSKANFAGDM AKFDFTWFIP AVIKYRKLLG EVLLVSLTLQ IIGLVTPMFF QVVMDKVLVN HAMKTLNVIA VGLICAILFE VTLTSIRTWV FAHTSSKIDV ELGARLFRHL LSLPLAYFQS RRVGDSVARV RELENIRSFL TGNAMTVVLD LLFSFVFLAV MLWYSVWLTL IVVVSIPLYI GLSAVFTPII RARLDVKFNR NAENQSFLVE TISGIDTVKA MAVEPRWTHK WDQQLAAYVT AGLAVTNVAT VASGGVTLVS KLVTAAIMWL GATLVIDHKM TVGELVAFNM LAGQVSSPIL RLAQLWNDFQ QVGISMSRLG DILNARTEVA GQKSRLPKLA GAIAFDQVAF RYRPDAPDVI RGISLAIAPG EVIGIVGRSG SGKSTLTKLV QRLYVPERGR VLIDGQDIAI VDTTSLRQQI GVVLQENTLF SRSIRDNIAL TNPAAPLEAI IEAARLAGAH EFICELPEGY DTIVGEHGTG LSGGQRQRIA IARALLTNPR ILIFDEATSA LDYESEKIIQ DNMRRICQGR TVLIIAHRLS AVREANRIIV MERGQIAEMG SHDQLLKHPQ GIYAHLYALQ QGGAA
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