| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0288 |
|---|
| Symbol | hmsR |
|---|
| ID | 1222420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 374519 |
|---|
| End bp | 375793 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637240148 |
|---|
| Product | N-glycosyltransferase |
|---|
| Protein accession | NP_521849 |
|---|
| Protein GI | 17548509 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.393224 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0606217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCGC TACTGGTCAA GCGCTGGATT TCCGGCTTCG TCTTCTACTA CCCGTTCTTC
ATGTCGTATT TCTGGATGAT CGGCGGGCTG CTGCATTTCT TCCTGCTGGA GCGGGGCACG
CAGGGCGTGC GGTATCCGCT CGCGCTGCTC GGGATGCGGG ACTACCCCAA GGTGTCGATC
ATCGTGCCGT GCTACAACGA GGAGGCCAAC GTGCGGGAGG TGATCAGCCA CCTGGCCCGC
ATGCGCTACC CCAACTACGA CATCATCGCC GTCAACGACG GCAGCAGCGA CCGTACCGGC
GAGTGCCTGA ACGCGTTGGC CGCGCGGCAC CCGCAGCTGG TGGTGATCCA CCAGTCGTCC
AACCAGGGCA AGGCGATCGG TTTGACCACT GCCACCCAGG TGACCGATGC CGAGTACCTG
ATGTGCATCG ACGGCGATTC GATCCTCGAC GTGGATGCCA TCGCCTGGAT GATCCGCCAC
CTGCTGGAGA ACCCGACCAT CGGCGCGGTG ACGGGCAACC CGCGCATCCG CACGCGCTCC
ACGCTGCTGG GGCGCATGCA GGTGGGCGAG TTCTCGTCCA TCGTCGGCCT GATCAAGCGC
ACCCAGCAGG TGTACGGCCG GCTGCTGACG GTGTCGGGCG TGGTGGTGAT GTTCCGCAAG
CACGCGCTGG AAGAGGTGGG CTACTGGAGC AACGACATGC TCACCGAGGA CATCGACATC
AGCTGGAAGC TGCAGGTGGG CGGCTGGATC ATCCGCTACG AGCCGCGCGC GCTGTCGTGG
ATCCTGATGC CCGAGACCTT CCGCGGCCTC TACAAGCAGC GGCTGCGCTG GGCCAAGGGC
GGCATCCAGG CGCTGATCAA GTACGCGCCG GCCATGCTGT CGCTGCGCCA GTCGATGATG
TGGCCGATCT TCTTCGAATA CGCGCTGTCG GTGGTGTGGG CGTACAACAT GCTGTTCGTC
ATCGCCTGGT CGGTGCTGGG CTTCTTCGTC GAGATGCCGC CGGCGTGGCG CTTCGAAGCC
TTCCCGCGCT GGCACGGCAC GCTGCTGTTC ATCACCTGCG TGCTGCAGCT GGCGGTGGGC
TGCTTCATCG ACCGCCGCTA CGACGACGGC ATCCTGCGCT ACTTCATCGA CACCGTCTGG
TATCCCGTGG CGTTCTGGAT TCTCAATCTC ATCACCACGG TGGTCGGGTT TCCGGCCGTC
GCCTTCCAGC GCGAGCGTGC ACGCGCCCGC TGGACCAGCC CCGACCGGGG CATACAACAG
GGGAATTCGC CATGA
|
|---|
| Protein sequence | MDPLLVKRWI SGFVFYYPFF MSYFWMIGGL LHFFLLERGT QGVRYPLALL GMRDYPKVSI
IVPCYNEEAN VREVISHLAR MRYPNYDIIA VNDGSSDRTG ECLNALAARH PQLVVIHQSS
NQGKAIGLTT ATQVTDAEYL MCIDGDSILD VDAIAWMIRH LLENPTIGAV TGNPRIRTRS
TLLGRMQVGE FSSIVGLIKR TQQVYGRLLT VSGVVVMFRK HALEEVGYWS NDMLTEDIDI
SWKLQVGGWI IRYEPRALSW ILMPETFRGL YKQRLRWAKG GIQALIKYAP AMLSLRQSMM
WPIFFEYALS VVWAYNMLFV IAWSVLGFFV EMPPAWRFEA FPRWHGTLLF ITCVLQLAVG
CFIDRRYDDG ILRYFIDTVW YPVAFWILNL ITTVVGFPAV AFQRERARAR WTSPDRGIQQ
GNSP
|
|---|
| |