Gene RSp0162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSp0162 
Symbolegl 
ID1222565 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand
Start bp188600 
End bp189862 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content68% 
IMG OID637240021 
Productendoglucanase precursor (endo-1,4-BETA-glucanase) protein 
Protein accessionNP_521723 
Protein GI17548383 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2730] Endoglucanase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCTGG TTGCCGCTTC GATGGCGGCC CTCATGCTTG CCGGTTGCGG CGGCGGCGAC 
GGTGACACCA CCCTCAGCAC GGCGGCCGCT ACCGACACCA CGACCCTGAA GACGGCCGCC
ACCACCTCGA TCTCGCCGTT GTGGCTCACC ATCGCCAAGG ACAGCGCGGC GTTCACGGTG
AGCGGCACGC GCACGGTGCG CTATGGCGCC GGCAGCGCGT GGGTGGCGAA GAGCATGTCC
GGCACAGGCC AGTGCACCGC CGCCTTCTTC GGCAAGGATC CGGCGGCCGG TGTCGCCAAG
GTATGCCAGG TGGCGCAGGG CACGGGCACC TTGCTGTGGC GCGGCGTCAG CCTGGCCGGC
GCCGAGTTCG GGGAGGGCAG CCTGCCGGGC ACCTACGGGA GCAACTACAT CTATCCGTCC
GCCGACAGCG CGACCTACTA CAAGAACAAG GGCATGAACC TCGTGCGCCT GCCGTTCCGC
TGGGAGCGGC TGCAGCCCAC GCTCAACCAG GCGCTCGACG CGAACGAGCT GTCGCGCCTG
ACCGGGTTCG TCAACGCCGT GACGGCGGCC GGCCAGACGG TGCTGCTCGA TCCGCACAAC
TACGCGCGCT ACTACGGCAA CGTGATCGGC TCGAGCGCGG TGCCCAACAG CGCGTACGCC
GATTTCTGGC GGCGCGTGGC CACCCAGTTC AAGGGCAATG CCCGCGTCAT CTTCGGGCTG
ATGAACGAGC CCAATTCGAT GCCGACCGAG CAGTGGCTGT CCGGCGCCAA CGCCGCGCTG
GCCGCAATCC GCTCGGCCAA TGCGAGCAAC GTGGTGTTCG TGCCCGGCAA CGCCTGGACG
GGCGCGCACA GCTGGAACCA GAACTGGTAC GGCACGCCGA ACGGCACCGT CATGAAGGGC
ATCAATGACC CGGGCCGCAA CCTCGTCTTC GAGGTGCACC AGTACCTGGA CGGCGATTCG
TCCGGCCAGT CGGCCAGCTG CGTGAGCGCC ACCATCGGCG CCGAGCGGCT GCAGGACTTC
ACCAACTGGC TGCGCAGCAA CGGCTATCGC GGCTTCCTGG GCGAGTTCGG CGCGGCCTCC
AACGACACCT GCAACCAAGC GGTTGCCAAC ATGCTCACCT TCGTGAAGAA CAATGCCGAT
GTCTGGACCG GCTGGGCGTG GTGGGCGGGC GGTCCGTGGT GGGGCGGCTA CATGTACTCG
ATCGAGCCGT CGAACGGCGT GGACAAGCCG CAGATGTCGG TGCTGGCGCC GTACCTGAAG
TAA
 
Protein sequence
MPLVAASMAA LMLAGCGGGD GDTTLSTAAA TDTTTLKTAA TTSISPLWLT IAKDSAAFTV 
SGTRTVRYGA GSAWVAKSMS GTGQCTAAFF GKDPAAGVAK VCQVAQGTGT LLWRGVSLAG
AEFGEGSLPG TYGSNYIYPS ADSATYYKNK GMNLVRLPFR WERLQPTLNQ ALDANELSRL
TGFVNAVTAA GQTVLLDPHN YARYYGNVIG SSAVPNSAYA DFWRRVATQF KGNARVIFGL
MNEPNSMPTE QWLSGANAAL AAIRSANASN VVFVPGNAWT GAHSWNQNWY GTPNGTVMKG
INDPGRNLVF EVHQYLDGDS SGQSASCVSA TIGAERLQDF TNWLRSNGYR GFLGEFGAAS
NDTCNQAVAN MLTFVKNNAD VWTGWAWWAG GPWWGGYMYS IEPSNGVDKP QMSVLAPYLK