| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0123 |
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| Symbol | prpR |
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| ID | 1222526 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 141978 |
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| End bp | 143927 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637239982 |
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| Product | putative propionate catabolism operon regulatory transcription regulator protein |
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| Protein accession | NP_521684 |
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| Protein GI | 17548344 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.323531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACTG CCCCCCACCT CGCGTTCCGC CCCCGCATCT GGGCCTGCGG CATCAGCCGC
CTGAGCGACC TGTTCCTCGA TATCGCCGCC GAATACAACG ACCGCGCCGA GCTGCGCGTC
ATCACACGCG GCTTCGAGGA CATCGTCCGC GAGATCGAGG CCGTCGGCGC CGAGCGCCCG
GACGTGGTGG TCGCGGGCGG CTCCAACGGC GCCTATCTCA AGCCGCGCCT GTCGCTGCCC
GTGGTCGTCA TCAACCCGAC CGGCTTCGAT GTGATGCACG CGCTGGCCCG CGCGCGCCGC
GAGGCGGAAT CGGTCGCCCT CGTCACCCAC GGCGACACGC CCGACGAGGT GCGCCGTTTC
GTCGCCGCGT ACGGCATGGA TGTGGTGTTT GCCGCGTACC AGTCCAGGCA GGACGCCGAG
AGCTGCGTGC TGGACCTGCG CGACCGCGGC GTGGGCGCGG TGGTCGGCCC CGGCCTGGTG
ACGGACCTGG CCGCGCAGGC CGGCCTGCAT GCGGTGTTCC TGTATTCGCG CGATTCCGTG
CGCGCCGCCT TCGACACCGC GCTGGAAGTG GTGCAGGCCA CCCGCCGCGA AGGCCAGCGC
CGCCAGCGCC TGGACAACCT GCTGCAACAT CTGCGCGACG GCGTGGTCGC GCTCGACGCC
CAGGGCCGGG TCGAGGCCAT CAACCAGCGG CTGGCCACCG CGCTCGGCAT CGACGCCAGG
CAGGCCGCCG GGCAGCCGCT GCTCGCCATC GCGCCCAACC TGCTGGGCCT GCTGCCCGAC
ACCGACGGCG ACACGCTCGG CACGGTGCGC GGCGTGAGCT ACGTCATTCA TCGCGGCCCG
CTGGCCAGCA CCGGCGCCGG CGCGGCCGAC GGCACCGTGT TCACCTTCCA GGAATCGCGC
GCGGTGGAGC GGCTCGACCG CACGCTGCGC TCCGGCCAGC GCGCCCCGCA GTTCACCGCC
CGCTACCGGA TCGACGACCT GATCGGCGCG TCCGCCCCGA TGGAGCGCGT GCGCGCGCTG
GTGCGGCGCT ATGCGAGGTC CGATGCGACC GTGCTGGTGC TGGGCGAGTC CGGCACGGGC
AAGGAGATGG TGGCGCAGGG CATGCATCAG CTGAGCGCGC GGCGCGACTT TCCGTTCGTC
GCCATCAACT GCGGCGCCTT CCCGGAGGCG CTGCTCGAGA GCGAGCTGTT CGGCTACGAA
GAGGGCGCCT TCACGGGTGC GCGCAAGGGC GGCAAGACCG GGCTGATCGA GGCCGCGCAT
CGCGGCACGC TGTTCCTCGA CGAGATCGGC GAGATGCCGC TGCCGCTGCA GAGCCGCCTG
CTGCGCGTGC TGCAGGAGCG CGAGGTGGTG CGGCTCGGTT CCACCGAGCC GACGCGCGTG
GACATCCGCG TGGTCGCCGC CACGCACCGC GCGCTGACGG ATGCGGTGGA GGCCGGCACC
TTCCGCGCCG ACCTGTACTA CCGCCTCAAC ATCCTCAGCA TCGCGCTGCC GCCGCTGCGC
GACCGGCCCG GCGACGTGCT GCCGCTGGCC GCCGAACTGC TGGTGCAGGC CGCGCGCCGC
GAGCCGCGCC TGCTGCTGCG CATTCCCGAC ACGGAGGTCG CCGCCCGCGT GCTGGCCGGC
GTTGCCGACC CGCTGCGGCG CTACCCATGG GCCGGCAACG TGCGCGAGCT GCAGAGCGTG
GTCGAGCGGA TCGCGGTGGA GCTGGCCGAC ACCGACGCCA TGGACGCTGG CGCCATCACG
CAAGACGTGC TGCGGGTGAT CGCGCCCGAG GTGTTCGAGG CGCGGGGGCA GGGGAAGACA
GCCGCGCTGA GCTTGCGCGA GCGCAGCCGG GGCGTGGAAG CGGAGGCGAT ACGCGCCGCG
CTGGCGGCGC ACGGCGGCGA CCGCGATGCC GTGTGCAAGG CGCTGGGGAT CAGCAAGACG
ACGTTGTGGC GGCGGTTGAA CGCAGGCTAG
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| Protein sequence | MSTAPHLAFR PRIWACGISR LSDLFLDIAA EYNDRAELRV ITRGFEDIVR EIEAVGAERP
DVVVAGGSNG AYLKPRLSLP VVVINPTGFD VMHALARARR EAESVALVTH GDTPDEVRRF
VAAYGMDVVF AAYQSRQDAE SCVLDLRDRG VGAVVGPGLV TDLAAQAGLH AVFLYSRDSV
RAAFDTALEV VQATRREGQR RQRLDNLLQH LRDGVVALDA QGRVEAINQR LATALGIDAR
QAAGQPLLAI APNLLGLLPD TDGDTLGTVR GVSYVIHRGP LASTGAGAAD GTVFTFQESR
AVERLDRTLR SGQRAPQFTA RYRIDDLIGA SAPMERVRAL VRRYARSDAT VLVLGESGTG
KEMVAQGMHQ LSARRDFPFV AINCGAFPEA LLESELFGYE EGAFTGARKG GKTGLIEAAH
RGTLFLDEIG EMPLPLQSRL LRVLQEREVV RLGSTEPTRV DIRVVAATHR ALTDAVEAGT
FRADLYYRLN ILSIALPPLR DRPGDVLPLA AELLVQAARR EPRLLLRIPD TEVAARVLAG
VADPLRRYPW AGNVRELQSV VERIAVELAD TDAMDAGAIT QDVLRVIAPE VFEARGQGKT
AALSLRERSR GVEAEAIRAA LAAHGGDRDA VCKALGISKT TLWRRLNAG
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