Gene RSc3219 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc3219 
Symbol 
ID1222082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3479557 
End bp3481752 
Gene Length2196 bp 
Protein Length731 aa 
Translation table11 
GC content64% 
IMG OID637239637 
Productputative transmembrane protein 
Protein accessionNP_521340 
Protein GI17547938 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00404503 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGGATC CGACTTCCGA CTCACCGCGC ATCCTCGTTG GCAGCGTGAC AGGCTTGACC 
CTGTTCGACC ACCGCGAACT GATTTGCGTC AAGCGCTCGC CCCTGCCCGG CATCGTGATC
TTCGTGCACG GCGTCAACTC CGAAGGCGAA TGGTTCACCG CCGCCGAGGA GGGCTTGTGC
AAGGGCGGAA ACCGCCGGCT TGGCCGCCTG GACGATCAGG TCGCGTTCAA GGACGGGCAG
CTCAAGCCCG CCCACTACAT CGAGGGTCTG ACGCCAGACG GCTTCATCAA TCCGAATATG
TGGGCGAAGA CTTATATCAA GCCCGAACCG TCGTTTTCTC CAGCCATCCA CTTCCGCTGG
GGCTACAAGG CCAACGCGGA AGAACTGAAG GAATTCGGCG ACAAGATCTT TCTGAATGAG
CAGGACTATT GGGGCGGCGG CCCCTTCGCC AATGGCTGCA CCGCCTTGCC GGACTTGTGG
CATGAAGGGC TGGACACCCG CGCCTTCGGG TTCCTCAACT TGCAAGGTAT GAACCCGACC
AATCGCCCCA TCTACCGCAC GCCGCCGCGC GCCTATGGCG TGCTGGCCGC ATTGCGGCTG
GCGAAGCTGA TCGAATCGAT CCGCAAGAAG CAGGCGGACG TGCCCATCAC GGTCGTGTGC
CACAGCCAGG GCAACATGGT CGGCATCACT GCCGCCTTCC TGGGTGAGCG CATGCCCGAG
GTCAAGGACC CCTGGGGCAA AAGCGGGCGC TGCGTGGCCG ATGCCTACGT GCTGGCGAAC
GCGCCCTACA GCCTGGAAGA GAACATCGGC GTGGACAACT GGGCACAGCG CGAAACGCAG
GACAGCGCTG GCCGGCGCGG ACGCGAGACC CACAGCGCGC GCACGCGGAC GCTCACGGCG
TTCTTCGACA TCCTCCGCAA GCGCGCCGAT TGCGAGATGG ACGCCGCCGA GATCGACGAG
GAGATGGCCA ACACGCGCAC CTCCGAGAGC GGCGGCAAGC CCTTCAACGC GGCGGACGAC
CGCAAGGCGC ACGGGCTCAA CGGCAAGACC TGCGGCCGCG TGACGCTCTA TAGCTGCCCG
CACGATCAGG TGATTTCCGC CACCACGGTG CGGGGCATCG GCTGGCGCGG CATGAACGAT
GCCGAGGTGA AGGCGACCGG GGGCGCGGGT GTGTTCACGC AGCGCGTCTT CGCCTCGGGC
TTCACGGTGG GCGAGTGGAA TGGCGACAAG CCTCCTGTCT ACGACACGTG GAAAGACGAC
TGGCGCCACG GCAAGAGCGA GACGCCGGGC TTCTGGTATC CATCCTCGCC GACCGCCAAG
TTCGGACTGG TGCGCGCGCT GAGCGGCAAT GAAACCGTGT GGGGCACGGT GGCGACCACA
GCCGTGGCTC CGGTGCTGTA CATCGTGACG CTCGCCACGT CCGCGCTGAA CATGATGCGC
GTCAACGCCG ATCCGCCCGA GGGTTGGAAG GTGACAGCTG ACGCGCCCAA GCTGGACCAG
CCGTTCACGC CGCAGGCGAT CCGCTACGGC AAGGTGGCCT CCGAGACCGA TGGCAGCGCC
CACAGTGACT TCAACGAGGG CAACGACCCG CAGTCGGCAG CGCGCAATGC ACGCAAGGCA
GACGAGGACA AGCGGACGGA CGACCCCTAC GACACCTACC AGGGCAAGCA GGCCGACATG
GCCGCGCAGG GCAACCTGGG AACCGAGGCC GCGCAGCGCT ACGAGGATCA CGCCATCGTG
CGCATGCGTG CGCGGCGCAC CGGCAACCGC GCCTGGGTGG ACGCGAACGG CAACGTGATC
GGCGAGGACG GCAAGAGCGA GATGCCCGAG GGCTACAAGA CGTGGCAGAC CAAGCAGGTG
GTGGAGATTC TGGACAGCGG CAAGAACAAC AACCCGTCGA ACCACTCGAG CATCATGACC
AACCCCATGC ATGCGGAGAA GGCGCTCGCC TATGACATAG CAATCGGGGT GAACTATCTG
ACGAACGAAC TGCGCATCGA GGCCGATTGG CGGTTCGGGG AAGGGCTGGA TAAAGACCAC
CCAAACAAGA AATATTCGAA GTATTTCTTT ACGGGCAAGC TCGATGAGAA ATTTCTTCAG
GAATGGGTCA AGAAGGCCGA GGAGGCCAAA ATGCCGCCGG GCATCGTGGA TGAGCGGGAG
GGCAGCGTGC ACTTGGTGGT GGGGGCGGTG GCATGA
 
Protein sequence
MTDPTSDSPR ILVGSVTGLT LFDHRELICV KRSPLPGIVI FVHGVNSEGE WFTAAEEGLC 
KGGNRRLGRL DDQVAFKDGQ LKPAHYIEGL TPDGFINPNM WAKTYIKPEP SFSPAIHFRW
GYKANAEELK EFGDKIFLNE QDYWGGGPFA NGCTALPDLW HEGLDTRAFG FLNLQGMNPT
NRPIYRTPPR AYGVLAALRL AKLIESIRKK QADVPITVVC HSQGNMVGIT AAFLGERMPE
VKDPWGKSGR CVADAYVLAN APYSLEENIG VDNWAQRETQ DSAGRRGRET HSARTRTLTA
FFDILRKRAD CEMDAAEIDE EMANTRTSES GGKPFNAADD RKAHGLNGKT CGRVTLYSCP
HDQVISATTV RGIGWRGMND AEVKATGGAG VFTQRVFASG FTVGEWNGDK PPVYDTWKDD
WRHGKSETPG FWYPSSPTAK FGLVRALSGN ETVWGTVATT AVAPVLYIVT LATSALNMMR
VNADPPEGWK VTADAPKLDQ PFTPQAIRYG KVASETDGSA HSDFNEGNDP QSAARNARKA
DEDKRTDDPY DTYQGKQADM AAQGNLGTEA AQRYEDHAIV RMRARRTGNR AWVDANGNVI
GEDGKSEMPE GYKTWQTKQV VEILDSGKNN NPSNHSSIMT NPMHAEKALA YDIAIGVNYL
TNELRIEADW RFGEGLDKDH PNKKYSKYFF TGKLDEKFLQ EWVKKAEEAK MPPGIVDERE
GSVHLVVGAV A