Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3219 |
Symbol | |
ID | 1222082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3479557 |
End bp | 3481752 |
Gene Length | 2196 bp |
Protein Length | 731 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637239637 |
Product | putative transmembrane protein |
Protein accession | NP_521340 |
Protein GI | 17547938 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00404503 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGGATC CGACTTCCGA CTCACCGCGC ATCCTCGTTG GCAGCGTGAC AGGCTTGACC CTGTTCGACC ACCGCGAACT GATTTGCGTC AAGCGCTCGC CCCTGCCCGG CATCGTGATC TTCGTGCACG GCGTCAACTC CGAAGGCGAA TGGTTCACCG CCGCCGAGGA GGGCTTGTGC AAGGGCGGAA ACCGCCGGCT TGGCCGCCTG GACGATCAGG TCGCGTTCAA GGACGGGCAG CTCAAGCCCG CCCACTACAT CGAGGGTCTG ACGCCAGACG GCTTCATCAA TCCGAATATG TGGGCGAAGA CTTATATCAA GCCCGAACCG TCGTTTTCTC CAGCCATCCA CTTCCGCTGG GGCTACAAGG CCAACGCGGA AGAACTGAAG GAATTCGGCG ACAAGATCTT TCTGAATGAG CAGGACTATT GGGGCGGCGG CCCCTTCGCC AATGGCTGCA CCGCCTTGCC GGACTTGTGG CATGAAGGGC TGGACACCCG CGCCTTCGGG TTCCTCAACT TGCAAGGTAT GAACCCGACC AATCGCCCCA TCTACCGCAC GCCGCCGCGC GCCTATGGCG TGCTGGCCGC ATTGCGGCTG GCGAAGCTGA TCGAATCGAT CCGCAAGAAG CAGGCGGACG TGCCCATCAC GGTCGTGTGC CACAGCCAGG GCAACATGGT CGGCATCACT GCCGCCTTCC TGGGTGAGCG CATGCCCGAG GTCAAGGACC CCTGGGGCAA AAGCGGGCGC TGCGTGGCCG ATGCCTACGT GCTGGCGAAC GCGCCCTACA GCCTGGAAGA GAACATCGGC GTGGACAACT GGGCACAGCG CGAAACGCAG GACAGCGCTG GCCGGCGCGG ACGCGAGACC CACAGCGCGC GCACGCGGAC GCTCACGGCG TTCTTCGACA TCCTCCGCAA GCGCGCCGAT TGCGAGATGG ACGCCGCCGA GATCGACGAG GAGATGGCCA ACACGCGCAC CTCCGAGAGC GGCGGCAAGC CCTTCAACGC GGCGGACGAC CGCAAGGCGC ACGGGCTCAA CGGCAAGACC TGCGGCCGCG TGACGCTCTA TAGCTGCCCG CACGATCAGG TGATTTCCGC CACCACGGTG CGGGGCATCG GCTGGCGCGG CATGAACGAT GCCGAGGTGA AGGCGACCGG GGGCGCGGGT GTGTTCACGC AGCGCGTCTT CGCCTCGGGC TTCACGGTGG GCGAGTGGAA TGGCGACAAG CCTCCTGTCT ACGACACGTG GAAAGACGAC TGGCGCCACG GCAAGAGCGA GACGCCGGGC TTCTGGTATC CATCCTCGCC GACCGCCAAG TTCGGACTGG TGCGCGCGCT GAGCGGCAAT GAAACCGTGT GGGGCACGGT GGCGACCACA GCCGTGGCTC CGGTGCTGTA CATCGTGACG CTCGCCACGT CCGCGCTGAA CATGATGCGC GTCAACGCCG ATCCGCCCGA GGGTTGGAAG GTGACAGCTG ACGCGCCCAA GCTGGACCAG CCGTTCACGC CGCAGGCGAT CCGCTACGGC AAGGTGGCCT CCGAGACCGA TGGCAGCGCC CACAGTGACT TCAACGAGGG CAACGACCCG CAGTCGGCAG CGCGCAATGC ACGCAAGGCA GACGAGGACA AGCGGACGGA CGACCCCTAC GACACCTACC AGGGCAAGCA GGCCGACATG GCCGCGCAGG GCAACCTGGG AACCGAGGCC GCGCAGCGCT ACGAGGATCA CGCCATCGTG CGCATGCGTG CGCGGCGCAC CGGCAACCGC GCCTGGGTGG ACGCGAACGG CAACGTGATC GGCGAGGACG GCAAGAGCGA GATGCCCGAG GGCTACAAGA CGTGGCAGAC CAAGCAGGTG GTGGAGATTC TGGACAGCGG CAAGAACAAC AACCCGTCGA ACCACTCGAG CATCATGACC AACCCCATGC ATGCGGAGAA GGCGCTCGCC TATGACATAG CAATCGGGGT GAACTATCTG ACGAACGAAC TGCGCATCGA GGCCGATTGG CGGTTCGGGG AAGGGCTGGA TAAAGACCAC CCAAACAAGA AATATTCGAA GTATTTCTTT ACGGGCAAGC TCGATGAGAA ATTTCTTCAG GAATGGGTCA AGAAGGCCGA GGAGGCCAAA ATGCCGCCGG GCATCGTGGA TGAGCGGGAG GGCAGCGTGC ACTTGGTGGT GGGGGCGGTG GCATGA
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Protein sequence | MTDPTSDSPR ILVGSVTGLT LFDHRELICV KRSPLPGIVI FVHGVNSEGE WFTAAEEGLC KGGNRRLGRL DDQVAFKDGQ LKPAHYIEGL TPDGFINPNM WAKTYIKPEP SFSPAIHFRW GYKANAEELK EFGDKIFLNE QDYWGGGPFA NGCTALPDLW HEGLDTRAFG FLNLQGMNPT NRPIYRTPPR AYGVLAALRL AKLIESIRKK QADVPITVVC HSQGNMVGIT AAFLGERMPE VKDPWGKSGR CVADAYVLAN APYSLEENIG VDNWAQRETQ DSAGRRGRET HSARTRTLTA FFDILRKRAD CEMDAAEIDE EMANTRTSES GGKPFNAADD RKAHGLNGKT CGRVTLYSCP HDQVISATTV RGIGWRGMND AEVKATGGAG VFTQRVFASG FTVGEWNGDK PPVYDTWKDD WRHGKSETPG FWYPSSPTAK FGLVRALSGN ETVWGTVATT AVAPVLYIVT LATSALNMMR VNADPPEGWK VTADAPKLDQ PFTPQAIRYG KVASETDGSA HSDFNEGNDP QSAARNARKA DEDKRTDDPY DTYQGKQADM AAQGNLGTEA AQRYEDHAIV RMRARRTGNR AWVDANGNVI GEDGKSEMPE GYKTWQTKQV VEILDSGKNN NPSNHSSIMT NPMHAEKALA YDIAIGVNYL TNELRIEADW RFGEGLDKDH PNKKYSKYFF TGKLDEKFLQ EWVKKAEEAK MPPGIVDERE GSVHLVVGAV A
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