| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3192 |
|---|
| Symbol | |
|---|
| ID | 1222055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3456925 |
|---|
| End bp | 3457386 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637239610 |
|---|
| Product | putative lysozyme (endolysin) protein |
|---|
| Protein accession | NP_521313 |
|---|
| Protein GI | 17547911 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3772] Phage-related lysozyme (muraminidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.226496 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCAACA TCCCACTACC GGCCATCGAA CTGGCCAAGC ATTTCGAGGG ATTTCATAGG
GTGGCGAGGG TCGACCCCAC CCGGGCTCAG CCGTATGTCT GTCCTGCCGG GTTTTGGACA
GTTGGCTACG GTCACCTTTG CGATCCGACG CACCCGCCCA TCACGCAGGC CCAGGCCGAA
GTCTATCTGG CGGCGGATCT CGTGACAGCG CTCAACGCGA CGCTGCGCTA CTGCCCCGTG
CTTGCCGCCG AGCCCCAGGG CCGGCTCGCC GCCATTGTGG ACTTCACCTT CAACCTGGGG
GCGGGGCGGT TGCAGACTTC GACCTTGCGG CGGCGGGTCA ACCAGCGCGA CTGGTCCGCT
GCTGCAAGCG AGCTGCGCCG CTGGGTCTAT GGTGGCGGCA AGGTGCTGCC GGGGCTCGCC
GCACGTCGCG AGGCAGAAGT GGCTTTATTG CGATTGAACT GA
|
|---|
| Protein sequence | MTNIPLPAIE LAKHFEGFHR VARVDPTRAQ PYVCPAGFWT VGYGHLCDPT HPPITQAQAE
VYLAADLVTA LNATLRYCPV LAAEPQGRLA AIVDFTFNLG AGRLQTSTLR RRVNQRDWSA
AASELRRWVY GGGKVLPGLA ARREAEVALL RLN
|
|---|
| |