Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3162 |
Symbol | |
ID | 1222025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3418319 |
End bp | 3421357 |
Gene Length | 3039 bp |
Protein Length | 1012 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637239580 |
Product | putative hemagglutinin-related protein |
Protein accession | NP_521283 |
Protein GI | 17547881 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCAGC GCGCCCATTA TCGGCCCAGG CAGACAGCCA TGACGCTGGC CGTCGCGGCC CTGGCTGCGA TGACGCAGAT GCAGACGGCG GAGGCCGCAA CCGTGAGCAG CCCCTTCGGG GGCATCTACG TCTGGAGCAT TGGCGATCTT TCCGTCACAT CGACCATTTC GGGCGGGGGG ATCGGCGTGG CAGCCTTCGC CCTCGGTACC CTCGGCACGC TGAGCAACAG CGGCGTCATC AGCGGCGGCT ACGGTTTCTA CACCTCCGGC GCGGTAGCCG CGCTGCACAA CGCGAGCGGC GGTACGATCA GCGGCACCGG CAACGACGGC GTCTTCAACA CCAGCAACAG CACCATCGGG ACGCTGACCA ACGATGGGGC CATCAGCGGC GCCCACTACG GCGTTCTCAA TTACTACGCC GCGACGATCA ATACGCTGAC GAACAGCGGT GCTATCACTG GCGGCGTTGT CAGCGGCAGC GGCAGCTGGG CCGGCATCGA CAACGCCGGG TCGATCGGCA CGCTGACCAA CACCAGCAGC GGCACGATCA GCGCCACCAG CAACGCTTCC GGCGTGTACA ACACATACAT GATCGACACG CTGTCCAACA GCGGCCTGAT CACCGCCGAC TCGCGTGGCA TCCTCAACAA CGGCACGATC ACCACGCTGA TTAACAACAG CGGCGGCACC ATCAGCCACA GCGGCACCGC TTTCGGCGAC GGCATCGACA ACAACGGCGG CACGATCGGC ACGCTCACCA ACAGCGGGGT CATCAGCGCC GCCGGCAGCA CCGGCTACGG TAACGGCATC GACAACAGCG GCACGATCAC CACGCTGACC AACAACAGCG GCGGCACCAT CGCCGGCAAC TACACCGGCC TCTACAACAG CGGCACGATC GGCACGCTGA CCAACCATGG CGCCATCATC GGCGGCTACA GTGCCGGCGT CGCCAATGAC GGCACCATCG GTACGCTGAC CAACAGCGGC GTCATCACCG GTTCCAACAG CTACAGCGGC AACGATGGTT TCGGCGTCAA GAACTCGGGC ACGATCACCT CGCTGACCAA CGCCAGCGGC GGTACCATCA GCGGCACGGT GAGCGGCAGC GGCGCTGCCT ACGGCGTCTT CAACGGCGGC ACGATCGGCT CGCTCGCCAA CAGCGGCCTG ATCACCGGCA GCACCTACGC GCTGTTCAAC GATACGGGCG GCACGCTCGG CCCCGTCACC AATGCGGGTG TGATCGCCGG CAACATCGGG AACCTGTCGA GCAACAACCT GAGCATCAGC GGGGGCACGG GCACGACCTT CGGCACGCTC ACCGGCTACG GCGGCGGCAG CACCCTCGGC ACCATCGACA ATCCCAATTC GAGCGTGGTG TTCGCCTCGG GCAATCTGCT GCTCAACGAC AACATCAACC TCGGCAGCGG CACCATCAAC GCGGTGAACA ACACCGGCTC GGCGGTGGTG CAGGTCAACC GGCCGGTGAC CATCACCGGC AACTACAACC AGGGCAGCGG CGCGACGCTG CAGATCGGCG TTGCCGGCGG CGCCACCACG CAAGGCACCC TCGCCACGGA CGCCGGCTAC GGCCGGCTGG TCGTGACCGG CAATACGACG ATTGCGCAGG GTTCGTCGAT CACGCTGCAG TCCAACGGCT ACGCCTTTGC TGCAGGGCAA CGCTACGTGG TGGTGGACAC GGCCGGCACG GCGGCCTACA ACGCGGGCAG CCTGCGGTAT GCGATCAATG GCTACACCTC CACCGTGACG GGCGCGGCCG TGGCCAACGG CAGCAACAGC GACCTGGTGC TGACCGTGGT CAGCGCGACG TCGCTGTCGT CGCCCGCGAC GCCAAGCCCG ACCACGAGCA CAACCACCAC CACAACCACA ACGCAGAACC CGGCATCGAT CGCCACCGTA CCGAACGCGG TGGCCTCGCT CAATGGCCTG TTGAGCTACA CCGGCATCAG CAGCCCCAAT CTGCTGAATC TGTATAACGC CGCGCTGGGT TCCCTGAGCG AGGGGTCGAC GGCAAGCGCC AACCAGATCG GCAAGCAACT GGGTGCGACC CAGACCGGGT GGGCGCCCGC TGCGCCGACA TTCGATGCGC TGAACGTGGT GGGGGCGCAC GTCAACACAC TGCGCCTGGC GCAGGCGGCG GGCACAACGG GGGTGGCGAC CGGCGACAGC CCGGCGTCGT GGGGCGTGTG GGGTCAGGCA TTCGGCGGCC ACGCCCAGCA GAACGAACGC GACCAGATCG ATGGCTACAG CGCGAACTAC GGCGGCTTGC TGATCGGCGC GGACCGTGAG ATCAACGACC GCTGGCGCGC CGGCGGCGTG TTTAGCTACA GCAACACGGC GATCGACAAC ACCGGCGATA CCTCGGGCAA CTCCGCCCGT GTCAATGGCT ACGGGCTGAT CGGCTACGCG AGCTATACCG GCAACCCGTG GTACGTGAAC CTCTCGGGCG CGGCAGTGCA GCAGCGATAC GACACGAGCC GCCTGGTGAG CATGCAAGGC CTTTCGGGCA CGGCCAGCGG GCATTTCAGC GGCCAGCAGT ATGTGGCACG CACCGAGGCC GGGTATCCGC TGTCGGTGGG TAGCGTGACG CTCACGCCGC TGGCGAGCCT GACGTACAGC TACCTGACCC AGGACAGCTA TACGGAGAAC GGCGGCAACG GGGCCGCCCT GTCGGTGGGC TCCACGCATG TCGGCTCGGT CAAGAGCGGC CTGGGTGCCA AGCTGGAGAA AGGCTTCGCG ACCCGCTACG GCCAGATCGT GCTGGAGGCG CGGGCACAGT GGATCCACGA GTACGACCAT GCCAGGCAGG TGACGAGCGC AAGCTTTGCG GCGGACGCAA CGGGCCAGAC GGCGTTCACG ACGGTGGGCA TGACGCCGGT GTCGGACCTC GCGGATATCT CGCTGGGCGC GACGCTGCTG CGGGCGAACA ACCTGAGCCT GTCCGCGCGC TACGAACTGC AGGCGGGCCG GGGCTTTGTC TCGCAGACGG GGAGCGTGCG CCTGCGGCAG CTGTTCTGA
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Protein sequence | MNQRAHYRPR QTAMTLAVAA LAAMTQMQTA EAATVSSPFG GIYVWSIGDL SVTSTISGGG IGVAAFALGT LGTLSNSGVI SGGYGFYTSG AVAALHNASG GTISGTGNDG VFNTSNSTIG TLTNDGAISG AHYGVLNYYA ATINTLTNSG AITGGVVSGS GSWAGIDNAG SIGTLTNTSS GTISATSNAS GVYNTYMIDT LSNSGLITAD SRGILNNGTI TTLINNSGGT ISHSGTAFGD GIDNNGGTIG TLTNSGVISA AGSTGYGNGI DNSGTITTLT NNSGGTIAGN YTGLYNSGTI GTLTNHGAII GGYSAGVAND GTIGTLTNSG VITGSNSYSG NDGFGVKNSG TITSLTNASG GTISGTVSGS GAAYGVFNGG TIGSLANSGL ITGSTYALFN DTGGTLGPVT NAGVIAGNIG NLSSNNLSIS GGTGTTFGTL TGYGGGSTLG TIDNPNSSVV FASGNLLLND NINLGSGTIN AVNNTGSAVV QVNRPVTITG NYNQGSGATL QIGVAGGATT QGTLATDAGY GRLVVTGNTT IAQGSSITLQ SNGYAFAAGQ RYVVVDTAGT AAYNAGSLRY AINGYTSTVT GAAVANGSNS DLVLTVVSAT SLSSPATPSP TTSTTTTTTT TQNPASIATV PNAVASLNGL LSYTGISSPN LLNLYNAALG SLSEGSTASA NQIGKQLGAT QTGWAPAAPT FDALNVVGAH VNTLRLAQAA GTTGVATGDS PASWGVWGQA FGGHAQQNER DQIDGYSANY GGLLIGADRE INDRWRAGGV FSYSNTAIDN TGDTSGNSAR VNGYGLIGYA SYTGNPWYVN LSGAAVQQRY DTSRLVSMQG LSGTASGHFS GQQYVARTEA GYPLSVGSVT LTPLASLTYS YLTQDSYTEN GGNGAALSVG STHVGSVKSG LGAKLEKGFA TRYGQIVLEA RAQWIHEYDH ARQVTSASFA ADATGQTAFT TVGMTPVSDL ADISLGATLL RANNLSLSAR YELQAGRGFV SQTGSVRLRQ LF
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