| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3155 |
|---|
| Symbol | |
|---|
| ID | 1222018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3408633 |
|---|
| End bp | 3409811 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637239573 |
|---|
| Product | putative antibiotic hydrolase signal peptide protein |
|---|
| Protein accession | NP_521276 |
|---|
| Protein GI | 17547874 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4257] Streptogramin lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCC TGCTGTACCT GGCCGCGCCG GCCATCGTGG GCGCAGCCCT TCTCTGCCTG
CCGGCCCCGT CCTCGGCTGC CGCGAATGCG GTGGGCGCCA ACGCCGTGAT CGGCGAATTC
GCGACGCCGT CCGCCGCCAG TTCGCCGCAG GGCGTGGATG TCGCCGGCGA CGGCAGCGTG
TGGTACTCGG AAACCACGGC GGGAAAAATC GCCGTGCTGC GCCCGGATGG CTCTTCGGCC
GAATTCCCGG TGCCCAACGG GGGTCAGCCT TTCATCCTCA AGGTGGCGGA TGACGGCGTC
TGGTTTACCG ACAGCGGGAC GCGCGCCATC GGGCATCTGG ACCCGGCCAC CGGGACGGTC
GAGACCTACG CAATTCCGTC CGGCGCATCG CCGTTCTTTA TCCAGGTCGG CCCGGACGGC
AGCAAATGGT TTACCGAGAC CGCGGGCATC GGTCGCCTCT CGCCGAATGG CGAGTTCACC
GAGTGGACGG TGACGCTGGA GCATGCCGAC GACAACATGG AACAGCTGAG CCTGGATCCC
TGGGGCAATG TCTGGTTCGT GGAGCGCAAT TTCGATGGCA TTGGCGCGGC CGGTACCAAC
AAGGTGCGCC GTCTCAATCC CTATTCGAAC GTGATCAGCA CCTACAGGGT GCCGACGCTG
GGCGGCACGC CGTCGGGCGT GGTGGCCAAT GCCAACGGGT CGGTCTGGGT GTCCGAGTAC
TACGCCAATG CGATCGCCTT GCTCAACCCC TTCGCCGCTC CGCACAGCGA TGAGGTGGTG
CAGCCCAACG CGCTGAAGGC CGACAGCCGG ACCGCATCGG TGTCGCCCAT CCGGGCCGCG
CGCACGACGG GCGCGAAGAC GCAGGTCACC CCCAGCGCCC ACGCGGTCAA GCCGTCCGTG
ACGCTGGGCT GGATCGAATA TCCCCTCCCG AGCGCCAAGG CCGAGCCGGA AGACATGCGT
GTCGATCGGC ATGGCCGCGT CTGGTTCGAG GCGGACGCCG GCTTCATCGG CCGCCTCGAT
CCCTTCGAGG CGCGCATCAC GGAATACATG ATCCCGTCGG CCAACAGCGG CTACTACAAC
ATCGCGCTGG ACCCGCGCTC CGGCTTGCTC TGGTTTACCG AGGCCGGTGT CTTCGCGCCG
GTGACGACCA AGATCGGCTA TCTGGACACG CGGCACTGA
|
|---|
| Protein sequence | MKRLLYLAAP AIVGAALLCL PAPSSAAANA VGANAVIGEF ATPSAASSPQ GVDVAGDGSV
WYSETTAGKI AVLRPDGSSA EFPVPNGGQP FILKVADDGV WFTDSGTRAI GHLDPATGTV
ETYAIPSGAS PFFIQVGPDG SKWFTETAGI GRLSPNGEFT EWTVTLEHAD DNMEQLSLDP
WGNVWFVERN FDGIGAAGTN KVRRLNPYSN VISTYRVPTL GGTPSGVVAN ANGSVWVSEY
YANAIALLNP FAAPHSDEVV QPNALKADSR TASVSPIRAA RTTGAKTQVT PSAHAVKPSV
TLGWIEYPLP SAKAEPEDMR VDRHGRVWFE ADAGFIGRLD PFEARITEYM IPSANSGYYN
IALDPRSGLL WFTEAGVFAP VTTKIGYLDT RH
|
|---|
| |