Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3116 |
Symbol | gspF |
ID | 1221980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3354195 |
End bp | 3355406 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637239534 |
Product | general secretory pathway F transmembrane protein |
Protein accession | NP_521237 |
Protein GI | 17547835 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.205783 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGCCT TCCGCTACGA AGCCGCCGAC GCCTCCGGCC GCACCGACCG CGGCGTCATC GAAGCCGACA GCGCCCGCCA GGCGCGCACC GCGCTGCGCG CCCGCGGGCT GACGCCGCTG GTGGTCGATG CGCTCGGTGC GCAGGCCGCC AAGCGCGCGG GCTCCCGTTT CGGCAAGCGG CTCTCGCCGC AGGAAAACGC CCTGGTGACG CGCCAGCTCG CCAGCCTGCT GGTCGCCGGC CTGCCGCTGG ACGAAGCGCT GGCCGCGCTG GCCGACCAGG CCGAACGCCC CTATGTGCAC GAGCTGCTGG CATCCATCCG CGCCGAGGTG GTGGGCGGCA GCTCGCTGTC GGTGGCGCTG GCCCAGCATC CGCGCGATTT TCCGGACATC TACCGCGCGC TGGTCTCGGC CGGCGAGCAT TCGGGCAACC TGGGGCTGGT GCTGTCGCGC CTGGCCGACT ACATCGAAAG CCGCAACGCG CTGACCTCCA AGATCAAGCT GGCCTTCACC TATCCGGCCA TCGTCACGGT GGTGGCCTTC GCCATCGTGA TCTTCCTGCT GTCGTACGTG GTGCCGCAGG TGGTGAGCGT GTTCGCCAAC ACCAAGCAGA AGCTGCCGAC GCTGACCATC ATCATGCTGT GGCTGTCGGA TTTCGTGCGC AACTGGGGAT GGCTGGCGGC GATCGTGCTG GCGGCGCTGG GGCTGCTGGT GCGCAAGCTG CTCCAGCAGC CGGCGCTGCG GCTGTCGTGG CATCGCTGGC TGCTGACCGC GCCGCTGTTC GGCAAGCTGG TCCGCGGCTA CAACACGGCG CGCTTTGCCA GTACGCTGGC CATCCTGAGC AGCGCCGGCG TGCCGATCCT GCGCGGCCTG CAGGCCGCCG GGGAAACGCT CAACAATGTC GCGCTCAAGA CCAACGTCGA GGATGCGGCC ACGCGTGTGC GGGAAGGCAC GTCGCTGGCG CGGGCGCTGG CGGCGCAGAA CCAGTTTCCG CCGGTGCTGG TGCACCTGAT CCGCTCGGGC GAGGCGACCG GCAACCTGCC GGCCATGCTG GAACGCGCGG CGCAAGGCGA GGCGCAGGAG CTGGAGCGGC GCACGCTGTT CCTGACCGGG CTGCTCGAAC CCGCGCTGAT CCTGACGATG GGGGTGGTGG TGCTGCTGAT CGTGCTGGCG GTGCTGATGC CGATCATCGA GATCAATCAG CTGGTGCACT GA
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Protein sequence | MPAFRYEAAD ASGRTDRGVI EADSARQART ALRARGLTPL VVDALGAQAA KRAGSRFGKR LSPQENALVT RQLASLLVAG LPLDEALAAL ADQAERPYVH ELLASIRAEV VGGSSLSVAL AQHPRDFPDI YRALVSAGEH SGNLGLVLSR LADYIESRNA LTSKIKLAFT YPAIVTVVAF AIVIFLLSYV VPQVVSVFAN TKQKLPTLTI IMLWLSDFVR NWGWLAAIVL AALGLLVRKL LQQPALRLSW HRWLLTAPLF GKLVRGYNTA RFASTLAILS SAGVPILRGL QAAGETLNNV ALKTNVEDAA TRVREGTSLA RALAAQNQFP PVLVHLIRSG EATGNLPAML ERAAQGEAQE LERRTLFLTG LLEPALILTM GVVVLLIVLA VLMPIIEINQ LVH
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