| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2867 |
|---|
| Symbol | dppD1 |
|---|
| ID | 1221715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3089395 |
|---|
| End bp | 3090414 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637239269 |
|---|
| Product | oligopeptide ATP-binding ABC transporter protein |
|---|
| Protein accession | NP_520988 |
|---|
| Protein GI | 17547586 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0407866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.542922 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGT CCGCCACCGC CAGGCCGACG CTCGCCGTCG AGGGCCTGAA GACCGAGTTC
ACCACGCGTG GCGGCGTCGC GCGGGCGGTC GACGACGTGT CGTTCGCGGT CGGGCGCGGG
GAGATCATGG GCCTGGTCGG CGAGTCCGGC TCGGGCAAGT CGATGACCGG CTATTCGATC
ATGGGCCTGA TCGACCCGCC CGGGCGCGTG GTCGGCGGCC GGATTGAGCT GACCGGGCGC
GATGGCGTGA CGCACGACCT GCGCACGCTG CCGGCCGGGC AGATGCGCGA CATGCGCGGC
AACCGCATCG CCATGATCTT CCAGGATCCG ATGATGACGC TGAACCCGGT CCTGCGCATC
GATACGCAGA TGACCGAGGC GGTGCTGGCG CATCAGCGCG TGAGCCGGCA GCGGGCGCGC
GAGATGGCGG GGGAGGCGCT GGCCAGGGTC GGCATCCCGT CGCCGGAGGC GCGGCTGCAG
GCGTATCCGC ACCAGTTCTC GGGCGGCATG CGGCAGCGGG TGGCCATCGC CATCGCGCTG
CTCAACAAGC CGGACCTGAT CATCGCCGAC GAGCCGACCA CGGCGCTGGA CGTGACCATC
CAGGGCCAGA TCCTGGCCGA GGTGCAGACG CTGTGCCGCG AGAGCGGGAC CGCGCTGATC
TGGATCACGC ACGATCTTTC CGTGGTGGCG GGCCTGGCCG ATACCGTGTG CGTGATGTAC
GCCGGCCGCA TCGTCGAGCA GGGCAGCGTG CAGCAGGTGC TGGAGACGCC GCGCCATCCG
TACACCTTCG GACTGATCGC CTCGGCGCCG TCGCGCAACC CGCGCGGCGT GCCGCTGCGG
CAGATTCCCG GCATGGCGCC GTCGCTGCTG GCGCTGCCCG GCGGGTGCGC GTTCCGCGAG
CGCTGTGCCT TTGCCTCCGA CATTTGCAAG CAGGCGCCCG CGCTCGAGCG GCTCGACGAC
GGCCGCGCGC TGCGCTGCTT TCACCCCGTG ACCCAACGCC CCGAGGAGAC CGCCGCATGA
|
|---|
| Protein sequence | MTMSATARPT LAVEGLKTEF TTRGGVARAV DDVSFAVGRG EIMGLVGESG SGKSMTGYSI
MGLIDPPGRV VGGRIELTGR DGVTHDLRTL PAGQMRDMRG NRIAMIFQDP MMTLNPVLRI
DTQMTEAVLA HQRVSRQRAR EMAGEALARV GIPSPEARLQ AYPHQFSGGM RQRVAIAIAL
LNKPDLIIAD EPTTALDVTI QGQILAEVQT LCRESGTALI WITHDLSVVA GLADTVCVMY
AGRIVEQGSV QQVLETPRHP YTFGLIASAP SRNPRGVPLR QIPGMAPSLL ALPGGCAFRE
RCAFASDICK QAPALERLDD GRALRCFHPV TQRPEETAA
|
|---|
| |