| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2866 |
|---|
| Symbol | dppF1 |
|---|
| ID | 1221714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3088334 |
|---|
| End bp | 3089398 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637239268 |
|---|
| Product | oligopeptide ATP-binding ABC transporter protein |
|---|
| Protein accession | NP_520987 |
|---|
| Protein GI | 17547585 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.23701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.803051 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGA CGCATCCCGA ACACGATGCC GCCGTGGCCG TCGAGGCGCC GTCCGCCGAG
CCCGGGCTGC GGGTGCCGAT CCTGTCGCTG CGGGGCATGT CCAAGCGCTT CGTCAAAGGG
CTGGACCTCT CGTCGCGCAT CGCCAACTGG TTCGGCGCGG GCCTGCGGGA AGAGGTGGTG
CATGCCGTCG ACCATGTCGA TCTCGATATT GCCGCCGGCG AGGTGGTCGG GCTGGTGGGC
GAGTCGGGCT GCGGCAAATC CACGCTGGGC CGGCTGGTCG TGGGCCTGCT CAAGCCGACC
GCCGGCACGC GGCTGTGGAA GGGCCTCGAC CTCGATCGCC TGCAGCCCGA GCGCCGCCGC
GAGAAGCAGC TCGCCATCCA GATGATCTTC CAGGACCCGT ACGCCTCGCT GAACCCGCGT
CTGCGCGTGC AGGACATCGT CGGCGAGGCG CCGGTGGTGC ATGGCATGGT CGAGGCGGCC
GCCCAGCGCG ACTACGTGGC CGAGATGCTC GCGCGCGTGG GCCTGGACCC GAGCGTGATG
CGGCGCTTCC CGCACCAGTT CTCGGGCGGG CAGCGGGCGC GGATCGGCAT CGCGCGGGCG
TTGGCGGTCA AGCCGGAGTT CCTGGTCTGC GACGAGTCGG TGGCGGCGCT GGACGTGTCG
ATCCAGGCGC AGGTGCTGAA CCTGTTCATC CGCCTGCGCG AGCAGCTGAA TCTGACCTAC
CTGTTCATCA GCCACGATCT GGGCGTGGTC AAGCACATCA GCGACCGCGT GGTGATCATG
TATCTGGGCC GGGTGGTGGA GTCCGCGCCC ACCGAGGCGA TCTTCGCGTC GCCCAACCAT
CCGTATACGC GGGCCTTGCT TGCCGAAGCC CCCAAACTGG AGGTGCGCAA GAAGACGTAC
GTGGCGATTT CCGGCGAGAT CCCGTCGCCG CTGGATCCGC CGCCCGGCTG CCATTTCCAC
CCGCGCTGCC CGCATGCGAT GCCGCGCTGC AGGGTGGAGT CGCCGGCGCT CAAAGAGATC
GCGCCGCTGC GGTTTTCCGC GTGCCATCTG AACGATCAGC CATAG
|
|---|
| Protein sequence | MSATHPEHDA AVAVEAPSAE PGLRVPILSL RGMSKRFVKG LDLSSRIANW FGAGLREEVV
HAVDHVDLDI AAGEVVGLVG ESGCGKSTLG RLVVGLLKPT AGTRLWKGLD LDRLQPERRR
EKQLAIQMIF QDPYASLNPR LRVQDIVGEA PVVHGMVEAA AQRDYVAEML ARVGLDPSVM
RRFPHQFSGG QRARIGIARA LAVKPEFLVC DESVAALDVS IQAQVLNLFI RLREQLNLTY
LFISHDLGVV KHISDRVVIM YLGRVVESAP TEAIFASPNH PYTRALLAEA PKLEVRKKTY
VAISGEIPSP LDPPPGCHFH PRCPHAMPRC RVESPALKEI APLRFSACHL NDQP
|
|---|
| |