Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2823 |
Symbol | ispB |
ID | 1221670 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3035739 |
End bp | 3036707 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637239224 |
Product | octaprenyl-diphosphate synthase |
Protein accession | NP_520944 |
Protein GI | 17547542 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000462084 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.156809 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGCCT CCGTCCTGCT CGCCCCCGTC GCCGAAGACA TGCACGCCGT CGATGCCGTG ATCCGGCGCC GACTCGGCTC GGAGGTCGCA CTGATCAACC AGATCGGCGA ATACATCATC AGCGCGGGAG GCAAACGCCT GCGTCCGGTG ATCCTGCTGC TGATGGCAAA CGCACTGGGC TATCGCGGCC AGCACCATTA CGAACTGGCG GCGGTGGTCG AGTTCATCCA TACCGCCACG CTCCTGCACG ACGACGTGGT CGACGAATCC GAGCTGCGCC GCGGCCGCCA GACCGCCAAC GCGGTGTTCG GCAACGCAGC CAGCGTGCTG GTGGGCGACT TCCTCTACTC GCGCGCCTTC CAGATGATGG TGCAGGCCGA CAGCATGCGC GTCATGCAGA TCCTGGCCGA TGCCACCAAC GTCATCTCCG AAGGCGAGGT GCTGCAACTG CTCAACATGC ACGACCCGGA CGTGACGGAG GAGCGCTACC TGCAGGTGAT CCGCTACAAG ACCGCCAAGC TGTTCGAGGC CGCGGCGCAG ATCGGAGCCG TGCTCTCGGG CGCCGACGCC GCCACCGAAG CCGCCGCCGC CGAATACGGC CGGCGCATCG GGACCGCGTT CCAGATCGTC GACGACCTGC TCGACTACAC CGCGACCGCC GACCAGATGG GCAAGAACGC CGGCGACGAC CTGCGCGAAG GCAAACCGAC CCTGCCGCTG ATCTATCTGC TGTCGCACGG CACCGAGACG CAGCGCGCGC TGGCGCGCCA GGCCATCGAA CAGGGCGGCA CCGAGCACTT CGATGCCATC TTCGCCGCCA TCCAGGCATC GGGCGCGCTC GAGTACACGC GCAAGGCCGC CGAGCACGAG GCTTCCGCAG CCGCGGAAGC AATAATTGCA TTACCCCCTT CCCAATTCCG CCAAACGCTG ATAGAGTTAT GTGCTTTCTC GCTGCAACGT CAGTCCTGA
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Protein sequence | MPASVLLAPV AEDMHAVDAV IRRRLGSEVA LINQIGEYII SAGGKRLRPV ILLLMANALG YRGQHHYELA AVVEFIHTAT LLHDDVVDES ELRRGRQTAN AVFGNAASVL VGDFLYSRAF QMMVQADSMR VMQILADATN VISEGEVLQL LNMHDPDVTE ERYLQVIRYK TAKLFEAAAQ IGAVLSGADA ATEAAAAEYG RRIGTAFQIV DDLLDYTATA DQMGKNAGDD LREGKPTLPL IYLLSHGTET QRALARQAIE QGGTEHFDAI FAAIQASGAL EYTRKAAEHE ASAAAEAIIA LPPSQFRQTL IELCAFSLQR QS
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