Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2716 |
Symbol | secF |
ID | 1221563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 2922556 |
End bp | 2923524 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637239117 |
Product | preprotein translocase subunit SecF |
Protein accession | NP_520837 |
Protein GI | 17547435 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.141872 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGTTTT TCCGCATCCG CCGCGACATT CCGTTCATGA AGCACGCGTT GGCCTTCAAC GCCGTGTCGT TCCTGACGTT CCTCGCCGCC GTCTTCTTCC TGTTCCACAA CGGGCTGCAT CTGTCGGTGG AATTCACAGG CGGCACCGTG ATGGAAGTCG CCTACACCCA GGCCGCCGAC CTGCCGAAGG TCCGCGCCGA CGTCGAGAAG CTCGGCTACG CCGATGCCCA GGTGCAGAAC TTCGGCACCT CGCACGACGT GATGATCCGC CTGCCGCTCA AGAACGGCCC GGACGGCAAG CCGATCGCCT CGGCCGTGCA GAGCCAGCAG GTGATGTCGT CGCTGATCGC CACCACGCCG GACGTCAAGC TGCAGCGCGT GGAGTTCGTC GGCCCGCAAG TCGGCAAGGA ACTGGCGACC GACGGCCTGC TGGCGCTGCT GTTCGTGGTG ATCGGCATCG TGATCTACCT GTCGATCCGC TTCGAATGGA AGTTCGCGGT GGCGGGCATC ATCGCCAACC TGCACGACAT CGTGATCATC CTGGGCTTCT TCGCCTTCTT CCAGTGGGAG TTCTCGCTGT CGGTGCTGGC GGCGGTGCTG GCGGTGCTGG GCTACTCGGT CAACGAATCG GTGGTGATCT TCGACCGGAT CCGCGAAGCC TTCCGCAAGT ACCGCAAGAT GAACACGCAC GAGGTGATCG ACCACGCCAT CACCAGCACC ATCTCGCGGA CCATCATCAC CCACGGCTCG ACCGAGATGA TGGTGCTGTC GATGCTGGTG TTCGGCGGCC CGACGCTGCA CTACTTCGCG CTGGCGCTGA CCATCGGCAT CCTGTTCGGC ATCTATTCGT CGGTGTTCGT GGCGGCCGCG CTGTGCATGT GGCTCGGCGT CAAGCGCGAA GACCTGGTCA AGGGCGAGAA GAAGACCACC GGCCCGACGG ACGATCCGAA CTTCGGCGCG CAGGTCTGA
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Protein sequence | MEFFRIRRDI PFMKHALAFN AVSFLTFLAA VFFLFHNGLH LSVEFTGGTV MEVAYTQAAD LPKVRADVEK LGYADAQVQN FGTSHDVMIR LPLKNGPDGK PIASAVQSQQ VMSSLIATTP DVKLQRVEFV GPQVGKELAT DGLLALLFVV IGIVIYLSIR FEWKFAVAGI IANLHDIVII LGFFAFFQWE FSLSVLAAVL AVLGYSVNES VVIFDRIREA FRKYRKMNTH EVIDHAITST ISRTIITHGS TEMMVLSMLV FGGPTLHYFA LALTIGILFG IYSSVFVAAA LCMWLGVKRE DLVKGEKKTT GPTDDPNFGA QV
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