Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2682 |
Symbol | pilT |
ID | 1221529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2890908 |
End bp | 2891951 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637239083 |
Product | twitching motility protein |
Protein accession | NP_520803 |
Protein GI | 17547401 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.310327 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACATCG CGCAGCTTCT GGCCTTCGCT GCCAAGAACA AAGCGTCTGA TCTGCACTTG TCGGCGGGCT TGCCTCCGAT GATCCGGATC CATGGCGACA TGCGCCGTAT CAACGTGCCG CCGCTCACGC ACCAGGATGT CCACGCCATG GTGTACGACA TCATGAGCGA CGTGCAGCGC AAGCATTACG AAGAAAACCT GGAAGCCGAC TTCTCGTTCG AGATTCCCGG GCTGTCGCGT TTCCGGGTCA ACGCCTTCAA CCAGAACCGC GGTGCCGCCG CCGTGTTCCG GACGATTCCG TCCAAGGTCC TGACGCTGGA AGACCTGAAG GCGCCGGCCG TCTTCGCCGA CCTCGCCATG AAGCCGCGCG GCCTGGTGCT GGTGACGGGG CCGACCGGCT CGGGCAAGTC GACCACGCTG GCGGCGATGG TCAATCACCG CAATGAAAGC GACCTGGGCC ACATCCTCAC GGTGGAGGAC CCGATCGAAT TCGTGCACGA ATCCAAGAAG AGCCTGATCA ACCAGCGCGA ACTGGGGCCG CATACCCATT CGTTTGCCAA CGCGCTGAAA TCGGCGCTGC GGGAAGACCC GGACGTGGTC TTGGTCGGCG AATTGCGTGA CCTGGAAACC ATCCGCCTGG CGCTGACCGC GGCCGAAACC GGCCACTTGG TGTTTGGCAC GCTGCACACG AGTTCCGCGG CCAAGACCAT CGACCGGGTG GTCGACGTGT TCCCCTCGGA TGAGAAGGAC ATGGTCCGCA CCATGTTGTC CGAATCGCTG GAAGCGGTGA TCTCGCAGAC GCTGCTCAAG ACGCGCGACG GCTCCGGCCG GGTCGCGGCG CACGAGATCA TGATCTGCAC GCCGGCCATC CGACACCTGA TCCGCGAGAA CAAGATCTCG CAGATGTACT CGATGATGCA GACCAGCAGC GGGCTGGGCA TGCAGACGCT GGACCAGTGC CTGGCGGAGC TCATCAAGCG CTCGGCGATC AACTACGCCG ACGCGCGTGC CATCGCCAAG AACCCGGACG CGTTCGCGAA CTGA
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Protein sequence | MDIAQLLAFA AKNKASDLHL SAGLPPMIRI HGDMRRINVP PLTHQDVHAM VYDIMSDVQR KHYEENLEAD FSFEIPGLSR FRVNAFNQNR GAAAVFRTIP SKVLTLEDLK APAVFADLAM KPRGLVLVTG PTGSGKSTTL AAMVNHRNES DLGHILTVED PIEFVHESKK SLINQRELGP HTHSFANALK SALREDPDVV LVGELRDLET IRLALTAAET GHLVFGTLHT SSAAKTIDRV VDVFPSDEKD MVRTMLSESL EAVISQTLLK TRDGSGRVAA HEIMICTPAI RHLIRENKIS QMYSMMQTSS GLGMQTLDQC LAELIKRSAI NYADARAIAK NPDAFAN
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