| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2681 |
|---|
| Symbol | pilU |
|---|
| ID | 1221528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2889716 |
|---|
| End bp | 2890855 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637239082 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | NP_520802 |
|---|
| Protein GI | 17547400 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.197859 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGACC GCGACGCCGC CACCAGATAT ATCCACGAAC TCTTGCAGCT CATGGTGAAC
AGCCGTGGCT CGGACTTGTT CATCACCGCG GAATTCCCGC CCGCCATCAA GGTGGACGGC
AAAGTCACGC CGATCTCGCA GCAGCCGCTG ACCACCGTCC AGGCCATGGG CCTGGTCAAG
GCGATCATGA GCGAGAAGCA GCTGCGCGAG TTCGAAGAGT CGTTCGAGTG CAACTTCGCC
ATCACCGCGC CCACCGCCGG CCGCTTCCGC GTGTCGGCGT TCATGCAGCA GGGCCGCGCC
GGCATGGTGC TGCGGACCAT CACCACCAAG ATCCCGACGC TCGCCGAACT GGATCTGCCG
CCCATCCTCA ACGAAGTCGC GATGAGCAAG CGCGGGCTCG TGGTGGTGGT GGGGGCGACG
GGCTCCGGCA AGTCGACCAC GCTGGCGGCG ATGGTCGGCT ACCGCAACGC GCATTCGTAC
GGCCACATCA TCACCATCGA AGACCCGGTG GAATATGTGC ACGCACACCA CAACTGCGTC
GTGACGCAGC GCGAGGTGGG CGTGGACACG GAATCCTGGC ACGTGGCGCT GAAGAACACG
CTGCGGCAGG CGCCGGACGT GATCCTGATC GGCGAAATCC GCGATCGCGA TACGATGGAG
TACGCCATCC AGTACGCCGA AACCGGCCAC TTGTGCCTGG CCACGCTGCA CGCCAACAGC
TCGAACCAGG CGATCGACCG GATCATCAAC TTCTTCCCGG AAGAGCGGCG TCAGCAGTTG
CTGATCGATC TGTCCCTGAA CCTGCGCGCC ATGATCGCGC AGCGCCTGCT GCCGCGCAAA
GGCAAGAAGG GCCGCGCGCC GGCGATCGAA ATCCTGCTGG GCACGCCGCT GGTGTCCGAC
CTGATCTTCA AGGGCGAGGT GCACGAGCTC AAGGAGGTCA TGAAGAAGTC GCGCGAGCAG
GGCATGGTCT GTTTCGACCA GGCGCTGTTC GAGCTCTACG AGGCGGACAA GATCACCTAT
GAGGATGCGC TGCGCAACGC GGATTCGCTG AACGACCTGC GTCTGCAGAT CAAGCTGCAT
AGCAAGCGCG GCGGGCCGGT GGATCTGACG GCCGGCACTG AGCATCTCAA CGTGATGTGA
|
|---|
| Protein sequence | MLDRDAATRY IHELLQLMVN SRGSDLFITA EFPPAIKVDG KVTPISQQPL TTVQAMGLVK
AIMSEKQLRE FEESFECNFA ITAPTAGRFR VSAFMQQGRA GMVLRTITTK IPTLAELDLP
PILNEVAMSK RGLVVVVGAT GSGKSTTLAA MVGYRNAHSY GHIITIEDPV EYVHAHHNCV
VTQREVGVDT ESWHVALKNT LRQAPDVILI GEIRDRDTME YAIQYAETGH LCLATLHANS
SNQAIDRIIN FFPEERRQQL LIDLSLNLRA MIAQRLLPRK GKKGRAPAIE ILLGTPLVSD
LIFKGEVHEL KEVMKKSREQ GMVCFDQALF ELYEADKITY EDALRNADSL NDLRLQIKLH
SKRGGPVDLT AGTEHLNVM
|
|---|
| |