| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2602 |
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| Symbol | traF |
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| ID | 1221449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2806866 |
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| End bp | 2807465 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637239003 |
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| Product | conjugal transfer TraF transmembrane protein |
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| Protein accession | NP_520723 |
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| Protein GI | 17547321 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.521949 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGCCC CGACCACTAC GGTAAACGCA CCTGCCGTTG CGCCGCGTCT TCGCTCGCGC
CTGCGCGCTT GCATCGTCGT GGCGACACTG ACCGCCATCG GCTTCGCTGC GCTGGCCTGG
GCGGCTTTCG TGTCGCCGCT GCCGCGTCTG ACCTACAACC CGTCCGACAG CGTAGCGGTC
GGCTGGTATC GCATCGACCC GTTCGACTCG CGCACCGCCT CGCTGCCACG TCCCTTGTCG
GTGGACAGCA TCGTGCTGGT GCCGCTGCCG GCCACGGCTG CCACGCTGGC TGCGCAGCGT
GGCTATCTGC CGACGCACAT TCCGCTACTC AAACGTGTGG GTGCGGTGGC GCCGCAACAC
GTCTGCATCG TCGCCGGTCA GGTACGCATC GACGGCGTGC CCTCGGCCGC CGTGCTGCCT
GCTGATCGGC TGGGCCGGCC GCTGCCGTCC TTACAGCTTT GCCGCCGCCT TGAACCGGGC
GAACTGTACC TGTTGAGCGT GACCAATCCG GCATCGTTCG ACAGCCGCTA CTTCGGCCCG
GTCAGCGCAT CCGCCGTGAT CGGCATTGCG CGCCCGATCT GGCTGGAGAC ACGCCCATGA
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| Protein sequence | MTAPTTTVNA PAVAPRLRSR LRACIVVATL TAIGFAALAW AAFVSPLPRL TYNPSDSVAV
GWYRIDPFDS RTASLPRPLS VDSIVLVPLP ATAATLAAQR GYLPTHIPLL KRVGAVAPQH
VCIVAGQVRI DGVPSAAVLP ADRLGRPLPS LQLCRRLEPG ELYLLSVTNP ASFDSRYFGP
VSASAVIGIA RPIWLETRP
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