Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2400 |
Symbol | |
ID | 1221246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2606993 |
End bp | 2608858 |
Gene Length | 1866 bp |
Protein Length | 621 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637238800 |
Product | outer membrane receptor protein |
Protein accession | NP_520521 |
Protein GI | 17547119 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.901841 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGCGC TTGCCGGCGC GCTGGCGGGG GTTGCGGCGG GGCCGGTCTG GGCACAGGGC GACGTGCAGT CGGCCGGCAT GCCTGTCGGC GAACTCAACC CGACCGTGGT GACGGCGTCG CGCAGCGAGC AGAAGCTTGC CGATGCGCTG CCGCATACCA CGGTCATCTC GCGCGCCGAC ATCGAGCGGT CGCAGGCACC GGATGCGGTG TCGCTGCTGC GCCGCGAGGC GGGCATCGAG ATCGCCCAGG CGGGCGGGCC GGGCGCGGCC GCGAGCCTCT TCATGCGGGG CGCCGGGTCC AACCAGACGC TCATTCTGAT CGACGGCGTG CGCGTGAGTT CCGGCACCAC CGGCACGACG CAGATCGAGC AGCTGATGGC CGATCAGATC GACCATATCG AGATCGTGCG CGGCAATGTC TCCGCGCTGT ACGGCTCGGA TGCGATCGGC GGGGTGGTGC AGATCTTCAC GCGCAACGGG CGCGGGCACG CGCCGCTGGC CAACGCGGAA ATCGAGTACG GCGCGCGCAA TACCAAGCGC GCGCAGGCCG GCATCAGCGG CCAGCTGGAC GCGCGCGGCG ACACGTCGTT CGCGCTGTCG GTGTCGGCGT TAAAGACGAC GGGTTTCTCG TCGATCAATC CGAAGCAGGC GCCGAACGCC AACCCGAACG ACAACGCGTA CGCGAACAAG AGCGTGTCGG CGCAGCTGCA GCATCGCTTC TCGTCCGACT GGCAGGCGGG GCTGACGTGG TTCCAGACCT GGAGCACCGT GAGCTACGAC AACGCGTTCG GCGCGCCCAC CGACGACAAC GAGTCGCACA ACCAGGTGCG TGCCATGTCG GCCTACGTGG ACGGCAAGCT GACGCCCGAC TGGAAGACGC GCCTGACGCT GTCGCAGGGC GACGACAAGA ACCTGAATTT CACCAACGGC CAGGTGCAGG AGCCGGGGCG CTTCAACACG CGGAACCGCC AGGCGTCGTG GCAGAACGAC TGGGCCTTCC TGCCGGACCA GATGCTGAAG GTCGGCTTCG AGCACCTGGA CCAGACCATC GACACCGATG CCTACTCGCC GCCGACGCGC CGTGTGGACT CGGGCTACAT CGGCTATGAA GGCAAGTTCG GCCGGCACCA GCTGCAGCTG AATCTGCGCC GCGACCGCTA CTCCGATTTC GGCGGCGCCA GCAGCTACTA TGCCGGCTAC GGCTTTGCCT TCAACCCGCA GTGGAAGGCG GTGGCCAGCA TCAGCAATGC GTTCCGGGCG CCCAGCTTCA ACGAGCTGTA CTACCCGTTC TTCGGCAACC CGAACCTGCA GCCGGAGAAG GCGCGCTCGG TGGAGGGCGG TGTGGAATAC CAGAGCACGG TCGGCCTTGT GCGCATGACG GCATTCGAAA CCGACTACAG CAACCTGATC ACCAGCGTGT TCGACCCCGT GTCGGGCAAT TTCCTGGCGG CCAACGTCAA CCGCGCGCGG GTGAACGGGC TGGAGACGTC CTGGCGGGGC ACGCTCCATG GCGTGGACGT GCGCGCCAGC TTGACCATCC AGAATCCGCA GGACCTGTCG GCGAACCGGC TGCTGGCGCG CCATGCCCGG CACTTCGGCA GCGTGTCGGC CTACAAGTCC TTCGGGCCGT TCTCGGCCGG CCTCGAGTGG AATGCCGCCG GCGAGCGGCA GGATTCGGCG CGTACGCTGG GCGGCTATGG CTTGCTCAAC CTGACGGGGC GTTACCAGAT CACGCATGAT TGGGCGCTGT CGGCGCGCGT GGAGAACCTG CTCAACAAGA ACTACCAGCT GATCGCCCCA TACAACACGG CATCGCGCGG GGTGTTCTTC ACGCTGTCGT GGCAACAGCA CGCACCGCAA CGATGA
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Protein sequence | MGALAGALAG VAAGPVWAQG DVQSAGMPVG ELNPTVVTAS RSEQKLADAL PHTTVISRAD IERSQAPDAV SLLRREAGIE IAQAGGPGAA ASLFMRGAGS NQTLILIDGV RVSSGTTGTT QIEQLMADQI DHIEIVRGNV SALYGSDAIG GVVQIFTRNG RGHAPLANAE IEYGARNTKR AQAGISGQLD ARGDTSFALS VSALKTTGFS SINPKQAPNA NPNDNAYANK SVSAQLQHRF SSDWQAGLTW FQTWSTVSYD NAFGAPTDDN ESHNQVRAMS AYVDGKLTPD WKTRLTLSQG DDKNLNFTNG QVQEPGRFNT RNRQASWQND WAFLPDQMLK VGFEHLDQTI DTDAYSPPTR RVDSGYIGYE GKFGRHQLQL NLRRDRYSDF GGASSYYAGY GFAFNPQWKA VASISNAFRA PSFNELYYPF FGNPNLQPEK ARSVEGGVEY QSTVGLVRMT AFETDYSNLI TSVFDPVSGN FLAANVNRAR VNGLETSWRG TLHGVDVRAS LTIQNPQDLS ANRLLARHAR HFGSVSAYKS FGPFSAGLEW NAAGERQDSA RTLGGYGLLN LTGRYQITHD WALSARVENL LNKNYQLIAP YNTASRGVFF TLSWQQHAPQ R
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