Gene RSc2380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2380 
Symbol 
ID1221226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand+ 
Start bp2584311 
End bp2584940 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content69% 
IMG OID637238780 
Producthypothetical protein 
Protein accessionNP_520501 
Protein GI17547099 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.074872 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones7 
Fosmid unclonability p-value0.00369317 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAGCCA AGCTTATTTC CGTCTCGCTG GTCGCGCTGC TGGCCGCCGG CTGTGCCACC 
GAACAGCAGA ACCAGACCCT GGCGGGCACG GGCGTGGGCG CCGCCGTGGG TGCCGGCATC 
GGCGCGCTGG TCGGCAACAG CAAGGGCGCG GCCATCGGCG GCGCGCTGGG CGCGGCCGGC 
GGCGCGGCCG TCGGCTACAA CTGGAACGCG ATCAAGTCCA AGCTGACCGG CGACACGGCC 
GGCACCGGCA CGCAGATCTC CGAGCAGCCG GACGGCTCGC TCAAGCTGAA CATCCCGAGC 
CAGGTCTCGT TCGATACCGA CAGCGCCGTG ATCAAGCCGT CTTTCCGCGG CCCGCTGGAC 
AGCGTGGCGG AAACCCTGAG CCAGCATCCT GAACTGGCCG CCAACGTGGT CGGCCACACC 
GACAGCACCG GCAACCCGAA CTACAACATG AGCCTGTCGC AGCGCCGGGC CCAGAGCGTG 
GCCAGCTACC TGACCGACCG CGGCGTGGCC CGCAACCGCA TGTCGGCCGA GGGCCGCGGC 
CAAACGCAGC CGGTCGGGGA CAACGCCACC GAGGCCGGCC GCGCACAAAA TCGCCGCGTC 
GAAATTTATT TGAAACCAAT TCAGGGATGA
 
Protein sequence
MKAKLISVSL VALLAAGCAT EQQNQTLAGT GVGAAVGAGI GALVGNSKGA AIGGALGAAG 
GAAVGYNWNA IKSKLTGDTA GTGTQISEQP DGSLKLNIPS QVSFDTDSAV IKPSFRGPLD 
SVAETLSQHP ELAANVVGHT DSTGNPNYNM SLSQRRAQSV ASYLTDRGVA RNRMSAEGRG 
QTQPVGDNAT EAGRAQNRRV EIYLKPIQG