Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2252 |
Symbol | pacF |
ID | 1221097 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2444630 |
End bp | 2445832 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637238651 |
Product | beta-ketoadipyl CoA thiolase |
Protein accession | NP_520373 |
Protein GI | 17546971 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0183] Acetyl-CoA acetyltransferase |
TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases [TIGR02430] beta-ketoadipyl CoA thiolase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00123839 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGAAG CCTTTATCTG CGACGCCATC CGCACGCCCA TCGGCCGCTA CGGCGGCAGC CTGTCCGCCG TGCGCGCGGA CGACCTCGGC GCGGTGCCCC TCAAGGCGCT GATGGCGCGC AACCCGCGGG TCGACTGGTC GGCCATTGAC GACGTGATCT TCGGCTGCGC CAACCAGGCC GGCGAGGACA ACCGCAACGT GGCGCGCATG TCGGCGCTGC TGGCCGGACT GCCCGACAGC GTGCCGGGCT CGACCATCAA CCGCCTGTGC GGCTCGGGCA TGGACGCCAC CGGCACCGCC GCGCGCGCCA TCCGCGCCGG CGAAACCGCG CTGATGATCG CCGGCGGCGT GGAGAGCATG AGCCGCGCGC CCTTCGTGAT GGGCAAGGCC GCCAGCGCCT TCTCGCGCGA CGCCGCCATG TACGACACCA CCATCGGCTG GCGCTTCGTC AATCCGCTGA TGCAGGCGCA GTACGGCGTC GACTCGATGC CCGAGACCGC CGAGAACGTC GCCGCCGACT ACCGGGTCAG CCGCGAAGAC CAGGATCGCT TCGCGCTGCG CAGCCAGGCC AGCGCCGCGC GCGCGCAGGC CGACGGCACG CTGGCGCAGG AAATCACGCC GGTGACGATC GCGCAGAAGA AGGGCGATCC GATCGTCGTA GACCGCGACG AGCATCCGCG CGCGACCACC CTGGAAGCGC TCGCCAGGCT CAAGGGCGTG GTGCGCCCGG CCGGCACCGT CACGGCCGGC AATGCCTCGG GCGTGAACGA CGGCGCCTGC GCGCTGCTGC TCGCCAACGA AGAGGCCGCC AAGCGCTTCG GCCTGACACC GCGCGCGCGC ATCATCGGCA TGGCCACCGC CGGCGTGCCG CCGCGCGTGA TGGGCATCGG CCCGGCGCCG GCCTCGCAGA AGGTGCTCGG GCAGCTTGGC CTGACGATCG ACCAGATGGA TGTGATCGAG CTGAACGAAG CGTTTGCCGC GCAAGGCCTG GCGGTGACGC GCCAGCTCGG CCTGGCCGAC GACGATGCGC GCGTCAACCC GAACGGCGGG GCCATCGCGC TGGGCCACCC GCTCGGCATG AGCGGCGCGC GCCTGGTGAC CACGGCGATG TACCAACTGC AGCGCACCGG CGGCCGCTAT GCGCTGTGCA CGATGTGCAT CGGCGTCGGC CAGGGCATCG CGCTGGTGAT CGAACGCGTG TGA
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Protein sequence | MTEAFICDAI RTPIGRYGGS LSAVRADDLG AVPLKALMAR NPRVDWSAID DVIFGCANQA GEDNRNVARM SALLAGLPDS VPGSTINRLC GSGMDATGTA ARAIRAGETA LMIAGGVESM SRAPFVMGKA ASAFSRDAAM YDTTIGWRFV NPLMQAQYGV DSMPETAENV AADYRVSRED QDRFALRSQA SAARAQADGT LAQEITPVTI AQKKGDPIVV DRDEHPRATT LEALARLKGV VRPAGTVTAG NASGVNDGAC ALLLANEEAA KRFGLTPRAR IIGMATAGVP PRVMGIGPAP ASQKVLGQLG LTIDQMDVIE LNEAFAAQGL AVTRQLGLAD DDARVNPNGG AIALGHPLGM SGARLVTTAM YQLQRTGGRY ALCTMCIGVG QGIALVIERV
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