Gene RSc2221 details

Gene Information

• Locus tag: RSc2221
• Symbol: dxs
• ID: 1221066
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: -
• Start bp: 2408516
• End bp: 2410426
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637238620
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: NP_520342
• Protein GI: 17546940
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 21
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACGTACG AACTTCTGAA CACCATCGAC GCTCCGGCCG AGCTACGCCG CCTGGACCGT 
CGCCAGCTCG GCACCCTGGC CGATGAGCTG CGCGCCTTCG TGCTCGAATC CGTCGCGCAG 
ACGGGGGGCC ACCTGTCGTC GAATCTGGGC ACGGTCGAGC TGACCATCGC GCTGCACTAC 
GTCTTCAACA CGCCGGACGA TCGCATCGTG TGGGACGTCG GTCACCAGAG CTATCCGCAC 
AAGATCCTGA CCGGCCGCCG CGAGCAGATG GCGACACTGC GCCAACTGGA CGGCATCTCC 
GGTTTCCCGC GCCGCAGCGA GAGCCCGTAC GACACCTTCG GCACCGCGCA TTCCTCCACC 
TCGATCTCCG CCGCGCTGGG CATGGCGCTG GGCGCCAAGA CGCAGGGCGA GAACCGCGTC 
GCCATCGCCG TGATCGGCGA CGGGGCGATG AGCGCGGGCA TGGCCTTCGA GGCGATGAAC 
AACGCCGGTG TCTATCGAAA CCTGCCGCTG GTGGTGGTGC TCAACGACAA CGACATGTCG 
ATCTCGCCGC CGGTGGGCGC GCTCAACCGC TACCTGGCGC GGTTGATGAG CGGCCAGTTC 
TACGCCGCCA CCAAGAAGGG CGTGGAGAAG CTGCTGTCGG TGGCGCCGCC GGTGCTGGAG 
TTCGCCAAGC GCTTCGAGGA GCACGCCAAG GGCATGCTGG TGCCGGCGAC GATGTTCGAG 
GAATTCGGCT TCAACTACAT CGGGCCGATC GATGGGCACG ATCTCGAATC CCTGGTGCCG 
ACGCTGCAGA ACATCCGCCA GCGCGCGCTG GAGGGCGGCC GGCCGCAGTT CCTGCACGTG 
GTGACCAAGA AGGGGCAGGG CTACAAGCTG GCCGAGGCCG ATCCGATCCT TTATCACGGC 
CCGGGCAAGT TCAATCCGCA GGAAGGCATC AAGCCCGCCG CGCGCCCGGC CAAGGTGTCC 
TACACGCAGG TGTTCGGCCA GTGGCTGTGC GACATGGCCG CCGCCGACAA GCGTCTGGTC 
GGTATCACGC CCGCCATGCG CGAGGGCTCG GGCATGGTGG AGTTCGAGCA GCGCTTCCCC 
GACCGCTATT ACGACGTCGG CATCGCTGAG CAGCACGCTG TCACCTTCGC CGGTGGCCTG 
GCGTGCGAGG GCCTCAAGCC GGTGGTCGCC ATCTATTCGA CCTTCCTGCA GCGCGGCTAC 
GACCAGCTGA TCCACGACGT GGCGCTGCAG AACCTGCCGG TGGTGTTCGC GCTGGACCGC 
GCGGGCCTGG TCGGCGCGGA CGGCGCGACG CATGCCGGCG CCTACGACAT GGCCTACCTG 
CGCTGCATCC CCAACATGAT GGTGATGGCG CCGGCCGACG AGAACGAGTG CCGCCAGCTG 
CTCAGCACGG CGTTCGCCCA GGACTGCCCG ACGGCGGTGC GCTATCCACG CGGTGCCGGC 
ACGGGCGTGG TGGTGCAGCC GACGCTGGAG CCGCTGCCGG TGGGCAAGGC CGAGGTGCGC 
CGCGCGTCCA CCGCACCGGC GGGCCAGCGC GTGGTGATCC TGGCTTTCGG TTCGATGGTC 
GCGCCGGCCG CCGCCGCCGC CGAGCGCCTG GATGCCACCG TGGTCAACAT GCGCTTCGTC 
AAGCCGCTGG ACGCGGCCTG CGTGCTGGAG ATGGCACGCA CCCACGATTA TGTGGTCACA 
GTGGAAGAGG GTTGCGTGAT GGGCGGCGCC GGCAGCGCCT GCCTGGAGGC GCTTGCCGCC 
GCCGGGGTGG CCACGCCGGT GCTGCAGTTG GGCTTGCCCG ACCGCTTCGT CGATCACGGC 
GATCATGCGG CGCTGCTGGC GCTGTGCGGA CTGGACGCCA ACGGCATCCT GGCGTCGATC 
CGCGAGCGCT TTGCGGTGCA GCCGCGCGCG GTGCAACCGC GCGTGGCGTA A 

 

Protein sequence

MTYELLNTID APAELRRLDR RQLGTLADEL RAFVLESVAQ TGGHLSSNLG TVELTIALHY 
VFNTPDDRIV WDVGHQSYPH KILTGRREQM ATLRQLDGIS GFPRRSESPY DTFGTAHSST 
SISAALGMAL GAKTQGENRV AIAVIGDGAM SAGMAFEAMN NAGVYRNLPL VVVLNDNDMS 
ISPPVGALNR YLARLMSGQF YAATKKGVEK LLSVAPPVLE FAKRFEEHAK GMLVPATMFE 
EFGFNYIGPI DGHDLESLVP TLQNIRQRAL EGGRPQFLHV VTKKGQGYKL AEADPILYHG 
PGKFNPQEGI KPAARPAKVS YTQVFGQWLC DMAAADKRLV GITPAMREGS GMVEFEQRFP 
DRYYDVGIAE QHAVTFAGGL ACEGLKPVVA IYSTFLQRGY DQLIHDVALQ NLPVVFALDR 
AGLVGADGAT HAGAYDMAYL RCIPNMMVMA PADENECRQL LSTAFAQDCP TAVRYPRGAG 
TGVVVQPTLE PLPVGKAEVR RASTAPAGQR VVILAFGSMV APAAAAAERL DATVVNMRFV 
KPLDAACVLE MARTHDYVVT VEEGCVMGGA GSACLEALAA AGVATPVLQL GLPDRFVDHG 
DHAALLALCG LDANGILASI RERFAVQPRA VQPRVA