Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2136 |
Symbol | |
ID | 1220978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 2316865 |
End bp | 2317923 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637238532 |
Product | porin signal peptide protein |
Protein accession | NP_520257 |
Protein GI | 17546855 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.101357 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTACA TCATCACCCG CTGCATCGCA CCCGCTGTCA TTGCCGCTGC GCTCGCCCTG CCCGCGCATG CCCAGTCTTC TGTCACGTTG TACGGACGGG TCGTCGGCGG CGTCGAGTAC ATCGACAAGG TGGCCGTTCC GGCCACGGGC AAGACCGGAT CGCTGCTGCA AGCCGCCGGC AATCAGTGGG GAACCAGCAT GTTCGGCATG AAAGGCAGCG AGTCGCTCGG CGGAGGTCTG CAGGCGCTCT TTACGCTGGA AAGCGGCTTC AGTCTGCCCA ATTCCGCGCT GAACGGGCCG GGCCTGTTCA ATCGCCGTTC GTACGTCGGG CTTTCCAGTC CGAGCTGGGG TACGTTGATC GTCGGCAAGA ACCTGTCCAT CAGCAACGAT ATCTGGGACA TTGACCCGAC CGGGCAGCAA TTCATGAGCA CCGCCACCCT CGTCAAGGGC AGGAACTGGC CGGGTGCCGA TAACATGATC GAATACCGCT CCCCGGATCT GGGCGGATTC TCGTTCGGGG CCCAGGCTTC CCTCAGCGAG CAACCCGCAG GACGGCGCGT CAGTGCTCAA GGGCTGTCGG CAACTTACCA GACCAGCGAC CTCATGCTTC GGGGCATCTA TACGGAGCGG CGAGACAGTG CCGGCGCGTT CAGCGATGTC TACAACGCTT CCAAGGATGG CATCCTGGGC GGCACGTATC GCATCGGGCC GGCCAAGCTC TTTGCCGGGT ATGAACGCAT CCTGGCATCG CAGACCGGCG CGGACACGGC ACCTTCGGCG CTCAGCCAGG CGTGGCTCGG GATCCGCTAC GACCTGACGC AAGCGGTGAC CCTCATTGGC GCCGTCTACC ACGTCAAAAG CAACCAGTCC GGCGGCAATG CCACGCTGGC CATGCTGGGC GTCGACTATT ACCTATCGAA GCGAACCTTC CTCTATGCCT CGCTCGGCGG GGTGAGCAAC GGCGCGAACG CGGACTACGC GGCCGATGTC ACGGCGGCGG GCCCCGGCGT GGGCAAGTCG CAACGCGTCG TTTATGTCGG CATGGGACAT TCGTTCTGA
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Protein sequence | MTYIITRCIA PAVIAAALAL PAHAQSSVTL YGRVVGGVEY IDKVAVPATG KTGSLLQAAG NQWGTSMFGM KGSESLGGGL QALFTLESGF SLPNSALNGP GLFNRRSYVG LSSPSWGTLI VGKNLSISND IWDIDPTGQQ FMSTATLVKG RNWPGADNMI EYRSPDLGGF SFGAQASLSE QPAGRRVSAQ GLSATYQTSD LMLRGIYTER RDSAGAFSDV YNASKDGILG GTYRIGPAKL FAGYERILAS QTGADTAPSA LSQAWLGIRY DLTQAVTLIG AVYHVKSNQS GGNATLAMLG VDYYLSKRTF LYASLGGVSN GANADYAADV TAAGPGVGKS QRVVYVGMGH SF
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