| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2000 |
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| Symbol | prpB |
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| ID | 1220840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 2176878 |
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| End bp | 2177789 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637238394 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | NP_520121 |
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| Protein GI | 17546719 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.440629 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.42713 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAGGAGAC CGGACATGAC CCTCGCCCCG CAAGCCAGCC CCGGCGCCCG CTTCCGCCAG
GCCCTGGCCG ACGAATCGCC GCTGCAGATC GTCGGCGCCA TCAACGCCAA CCACGCGCTG
CTCGCCAAGC GCGCCGGCTA CCGCGTGATC TACCTGTCGG GCGGCGGCGT GGCGGCCGGC
TCGCTGGGCC TGCCCGACCT CGGCATCTCG GGCCTGGACG ACGTGCTGAC CGACGTGCGC
CGCATCACCG ACGTGTGCGA CGTGCCGCTG CTGGTGGACG TCGATACCGG CTTCGGCGCC
TCGGCGTTCA ACGTGGCGCG CACAACCCGC TCGCTCATCA AGTTCGGCGC GGCGGCCATG
CATATCGAGG ACCAGGTGGG CGCCAAGCGC TGCGGCCATC GGCCCAACAA GGAGATCGTC
TCGAAGGACG AGATGGTCGA CCGCATCAAG GCCGCCGTCG ATGCCCGCAC CGATCCGGGC
TTCGTGGTGA TGGCGCGCAC CGACGCGCTG GCCGTGGAAG GCCTGGACCG CGCCATCGAG
CGCGCCGTGG CCTGCGTGGA AGCCGGCGCG GATGCGATCT TTCCCGAGGC GATGACCGAC
CTGTCGATGT ACCGCCGCTT CGTCGATGCG GTGAAGGTGC CGGTGCTGGC CAACATCACC
GAATTCGGCC AGACGCCGCT GTTCACGCGC GACGAGCTGG CCTCGGCGGG CGTGGCGATG
ATCCTGTACC CGCTGTCGGC GTTCCGCGCC ATGAACAAGG CCGCCGAGAA CGTCTACGCC
GCCATCCGCC GCGACGGCAC GCAGAAGAAC GTGGTCGACG CCATGCAGAC GCGCATGGAG
CTGTACGACA GCATCGGCTA CCACGACTAC GAAGCCAAGC TGGACGCACT GTTCGCGCAG
AGCCGCGGCT GA
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| Protein sequence | MRRPDMTLAP QASPGARFRQ ALADESPLQI VGAINANHAL LAKRAGYRVI YLSGGGVAAG
SLGLPDLGIS GLDDVLTDVR RITDVCDVPL LVDVDTGFGA SAFNVARTTR SLIKFGAAAM
HIEDQVGAKR CGHRPNKEIV SKDEMVDRIK AAVDARTDPG FVVMARTDAL AVEGLDRAIE
RAVACVEAGA DAIFPEAMTD LSMYRRFVDA VKVPVLANIT EFGQTPLFTR DELASAGVAM
ILYPLSAFRA MNKAAENVYA AIRRDGTQKN VVDAMQTRME LYDSIGYHDY EAKLDALFAQ
SRG
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