| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1994 |
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| Symbol | sdhA |
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| ID | 1220834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2170809 |
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| End bp | 2172587 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637238388 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | NP_520115 |
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| Protein GI | 17546713 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.398561 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.821237 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGCAG TCAAGACTGG GCTGCCGCGC CGCAAGTTCG ACGTCGTGAT CGTCGGCGCG
GGCGGCGCGG GCATGCGCGC ATCGCTGCAG CTCGCTGAAG CCGGCCTTTC CGTGGCCGTG
CTGTCCAAGG TTTTCCCCAC CCGCTCCCAC ACCGTGGCGG CGCAAGGTGG CATCGGTGCT
TCGCTGGGCA ACATGAGCGA AGACAACTGG CACTATCACT TCTACGACAC CATCAAGGGT
TCCGACTGGC TCGGCGACCA GGATGCGATC GAGTTCATGT GCCGCCAGGC GCCGCAAGTG
GTCTATGAAC TGGAGCACTT CGGCATGCCG TTCGACCGCA ATGCCGACGG CACCATCTAC
CAGCGCCCGT TCGGCGGCCA CACGTCCAAC TACGGCGAGA AGCCGGTGCA GCGTGCCTGC
GCCGCCGCCG ACCGGACCGG CCACGCGCTG CTGCACACGC TGTACCAGCG CAACGTGCGT
GCCAAGACCC ACTTCTTCGT CGAATGGATG GCGCTGGACC TGATCCGCGA CCAGGACGGC
GACGTGCTGG GCGTGACCGC GCTGGAAATG GAAACCGGCG AGGTCTACAT CCTCGAAGCC
AAGACCACGC TGTTCGCCAC GGGCGGTGCC GGCCGTATCT ACGCAGCTTC CACCAACGCC
TTCATCAACA CGGGTGACGG CCTGGGCATG GCGGCGCGCG CCGGCATCCC GCTGGAAGAC
ATGGAGTTCT GGCAGTTCCA CCCGACCGGC GTGGCCGGCG CGGGCGTGCT GATCACCGAA
GGCGTGCGCG GCGAGGGCGG TATCCTGCGT AACAAGGACG GCGAGCGCTT CATGGAGCGC
TATGCCCCGA CGCTGAAGGA TCTGGCGCCG CGTGACTTCG TGTCGCGCTC GATGGACCAG
GAAATCAAGG AAGGCCGCGG CTGCGGCCCG AACGGCGACT ACGTGCTGCT CGACCTGACC
CACGTCGGTG CCGAGACCAT CATGAAGCGC CTGCCGTCCA TCCGCGAGAT CGGCCTGAAG
TTCGCCAACG TGGACGCCAT CAAGGAACCG ATCCCGGTGG TGCCGACCAT CCACTACCAG
ATGGGCGGTA TCCCGACCAA CTATCACGGT CAGGTCGTGG TGCCGAAGAA CGGCAGCCCG
AACGAAGTCG TGAACGGCTT CTACGCGATC GGCGAATGCT CGTGCGTGTC GGTGCACGGC
GCCAACCGCC TGGGCACGAA CTCGCTGCTC GACCTGGTGG TGTTCGGCCG CTCGGCCGGT
AACCACATCG TCGCGCAGAA CCTGAAGAAC CGCGAACACA AGCCGCTGCC GGCCGATGCC
GCCGACCGCG CGCTGGCCCG CCTGGCCAAG CTGGACAGCT CCAGCTCGGG CGAGTACGCG
CAGGACGTCG CCAACGATAT CCGCCGCAAC ATGCAGGCGC ATGCCGGCGT GTTCCGCACG
CAGAAGCTGA TGGACGAAGG CGTCGAGCGC ATCATGGAAG TGACCGAGCG CGCCGCCAAC
ATCCACCTGA AGGACAAGTC GAAGGTGTTC AACACCGCGC GCGTCGAAGC GCTGGAAGTG
GCCAACCTGG TGGAAGTCGC CAAGGCGACG ATGGTGTCGG CCGCCGCCCG CAGGGAATCG
CGCGGCGCAC ACGCCCACAG CGATTTCCCG AACCGTGACG ACGACAACTG GCTCAAGCAC
ACGCTGTTCT ACAGCGAAGG CAACCGCCTC GAGTACAAGC CCGTGCAGAT GAAGCCGCTG
TCGGTGGAAA GCGTGCCGCC CAAGGCGCGG ACCTTCTAA
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| Protein sequence | MVAVKTGLPR RKFDVVIVGA GGAGMRASLQ LAEAGLSVAV LSKVFPTRSH TVAAQGGIGA
SLGNMSEDNW HYHFYDTIKG SDWLGDQDAI EFMCRQAPQV VYELEHFGMP FDRNADGTIY
QRPFGGHTSN YGEKPVQRAC AAADRTGHAL LHTLYQRNVR AKTHFFVEWM ALDLIRDQDG
DVLGVTALEM ETGEVYILEA KTTLFATGGA GRIYAASTNA FINTGDGLGM AARAGIPLED
MEFWQFHPTG VAGAGVLITE GVRGEGGILR NKDGERFMER YAPTLKDLAP RDFVSRSMDQ
EIKEGRGCGP NGDYVLLDLT HVGAETIMKR LPSIREIGLK FANVDAIKEP IPVVPTIHYQ
MGGIPTNYHG QVVVPKNGSP NEVVNGFYAI GECSCVSVHG ANRLGTNSLL DLVVFGRSAG
NHIVAQNLKN REHKPLPADA ADRALARLAK LDSSSSGEYA QDVANDIRRN MQAHAGVFRT
QKLMDEGVER IMEVTERAAN IHLKDKSKVF NTARVEALEV ANLVEVAKAT MVSAAARRES
RGAHAHSDFP NRDDDNWLKH TLFYSEGNRL EYKPVQMKPL SVESVPPKAR TF
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