| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1983 |
|---|
| Symbol | trpB |
|---|
| ID | 1220823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2157333 |
|---|
| End bp | 2158544 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637238377 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | NP_520104 |
|---|
| Protein GI | 17546702 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00755336 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGAG AGATTGCCAT GTACAACCTG CCCGACGCCC ACGGCCACTT CGGCCCTTAC
GGCGGCACCT TCGTTGCGGA AACGCTGTCC CACGCGCTGG ACGAGCTGCG CGATGCCTAT
GCGCGCTATC AGCACGATCC CGAATTCATC AAGGAATACG AGTACGAGCT GAAGCATTTC
GTCGGCCGTC CGTCGCCCAT CTACCATGCC CGCCGCCTGA CCGAGCATTG CGGCGGCGCG
CAGATCTACC TCAAGCGCGA AGACCTGAAC CACACCGGCG CGCACAAGGT GAACAACGTC
ATCGGCCAGG CGCTGCTGGC GCGCCGCATG GGCAAGCCGC GCGTGATCGC CGAGACCGGC
GCCGGCCAGC ACGGCGTGGC CACCGCCACC ATCGCCGCGC GCTACGGCAT GGAGTGCGTG
GTCTACATGG GCAGCGAGGA CGTGCGCCGG CAGGCCGCCA ACGTCTATCG CATGAAGCTG
CTGGGCGCGA CCGTGGTGCC GGTGGAGTCC GGTTCGCGCA CGCTCAAGGA CGCGCTGAAT
GAAGCGATGC GCGACTGGGT CACCAACGTG GCCGACACCT TCTACATCAT CGGCACCGTG
GCCGGTCCGC ACCCGTATCC GATGATGGTG CGCGACTTCC AGGCCGTGAT CGGCGAGGAA
TGCAAGGTGC AGATGCCCGA GCTGGCCGGC CGCCAGCCGG ACGCCGTGAT CGCCTGCGTG
GGCGGCGGCT CCAACGCCAT GGGCATTTTC TATCCGTACA TCGACCATGC CAGCGTGCAG
TTGATCGGCG TGGAAGCGGC GGGCGAGGGC CTCGAGTCGG GCCGGCATGC CGCGTCGCTC
ACGGGCGGCT CGCCGGGCGT GCTGCACGGC AACCGCACCT ATCTGCTGCA GGACGAGGAC
GGCCAGATCA TCGAGACGCA TTCGATCTCG GCCGGCCTGG ACTACCCCGG TGTCGGCCCC
GAGCATGCCT GGCTGAAGGA CGCGGGTCGC GCGCAGTATG TCGGCATCAC CGACAAGGAA
GCGCTGCAGG CCTTCCACGA CCTGTGCCGC ATGGAGGGCA TCATCCCCGC GCTGGAGTCC
AGCCATGCGC TGGCCTACGC CTGCAAGCTG GCGCCGACGC TGCCGAAGGA CAAGATCCTG
CTGGTCAACC TGTCCGGCCG CGGCGACAAG GACATGCATA CCGTCGCCGA ACTCTCGGGC
ATCGATCTCT GA
|
|---|
| Protein sequence | MPREIAMYNL PDAHGHFGPY GGTFVAETLS HALDELRDAY ARYQHDPEFI KEYEYELKHF
VGRPSPIYHA RRLTEHCGGA QIYLKREDLN HTGAHKVNNV IGQALLARRM GKPRVIAETG
AGQHGVATAT IAARYGMECV VYMGSEDVRR QAANVYRMKL LGATVVPVES GSRTLKDALN
EAMRDWVTNV ADTFYIIGTV AGPHPYPMMV RDFQAVIGEE CKVQMPELAG RQPDAVIACV
GGGSNAMGIF YPYIDHASVQ LIGVEAAGEG LESGRHAASL TGGSPGVLHG NRTYLLQDED
GQIIETHSIS AGLDYPGVGP EHAWLKDAGR AQYVGITDKE ALQAFHDLCR MEGIIPALES
SHALAYACKL APTLPKDKIL LVNLSGRGDK DMHTVAELSG IDL
|
|---|
| |