| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1944 |
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| Symbol | |
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| ID | 1220784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2118715 |
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| End bp | 2121312 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637238338 |
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| Product | putative VGR-related protein |
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| Protein accession | NP_520065 |
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| Protein GI | 17546663 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.463314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTGGGCC TGTCGTTCCC AAAGGACGAC GCTCCCACGG CGACTGACCC ACGGGGCCGG
TCGTTCCCCG TGCAGATGGT GGTCGAGCGC CTGGAGGCTC AGGAGGGCCT GGGCCAGGAC
TTTCGGTTCG AGTTGACGCT ATTGGCCGAC CACGCCGGCC TTGTTCTGGC GGACATGCTC
GGCAAACTGC TAGCGGTGTC ACTGGTCAAG CCGGACGGCA CGCTGCGCTG GTTTACCGGG
CACGTGGCGG AATTCTCGTT GGTGGGCAGT GATCCCGGCG TGGCGACCTA CCGGGCGGTG
CTCAGGCCGT GGCTGTGGTT CGCGCGGCAA CGGGTGAACA ACCGCGTGTT CAGGGACCGG
ACCCTGTACC AGCAGATTGC CGACATCCTG CAAGGCCACG GAGACTGGGC GCTGTGGCAA
TGGGACGTAA GCGGCGACGA TGTGCCGTTC ACCATGGCCG TGCAGGGCGG CGGCGAGGGT
GAGAGCGAGC ACAATTACAT CCACCGACGC CTGGAAGCGC GGGGCTGGAC CTACTACTAC
AAACACGACG CGACCGGCCA CCAGCTGGTC ATCATCGACA GCAACAGCCA GTGCCCGCCG
GTGGACGGGA ACGACCCCCG CATTCCCTTC CAGGCCGAGG GCGGGCCGCA GGAGGAGAAC
GCCATCCAGC GCTGGACGCC AGTGCAGACT GCCGTGGCCG CGCTGTTCGC GGCGAGCGCG
TTCGACTTCA AGCGCCCGCA GGCACGGCAC CATACCGAAT CGACGCAGCG CAAGCAGGGC
CGCGTTCCGG AGCTGGAGAC GCACGAATAC GTGGGGCACT ACGGCTTCCG GAAGGAAGAC
CCCACGGGCG CAGCGCTGCT GAACCTGCGC AGAGAGGAAA TCGAAGCGCA TGCGCAGCAG
TACCAAGCCG AGGGCAACAA CAGCAGCGTG GTTTGCGGCG GCTGGTTTTA TCTGTTCGGG
CACTTCAGCA ACACCGAGCG CGAGGAGGAC AGCCAATATC TGATCGTGGC GGCAAGCCAC
AGCGCGAGCA ACAACTACCC AGCCGAACTG GGCCGGCAGG GCGGCCACAC GGCGGAGCCG
CTTCCCGGCC GCAAGGGCGA ATACCGCAAC CGCTTCACCG CGATCAAGCG CGCCGTGCCC
TGGCGCCCCG GCCGGGGACG GAACAGCGTC GAAGTGAAGG TGGATGGGCA CCAGACGGCC
AGGGTAGTCG GCCGCGATGG TCTGGGTGCG GTGGACGTGG ACGAACACGG CCGCATCCTG
ATCCAGTTCC ACTGGGACCG GGAAGGCAAG CACAGCGCGC GCGTGCGGGT GGCGAGCAAC
TGGGCGGGCG GTGAAACTGG CATGGTGTCG TGGCCACGCG TGGGCAGCGA AGTGCTGGTG
GTCGCGTTGG ACGGCAACCC CGACCACTTC CTGGTCATCG GCGTTGTCCA CAATGCCCAG
CGCATGCCGC CGTGGCAATT GCCGACGCAG GGGGTGCTGA TGGGCATCCG CAGCCGGGAA
CTGACCCCGG ACGGCGGCAA CGATCCCGGC GGCCGTAGCA ACCTCTTAGC CCTGGACGAC
ACCGCAGGCA GGATCCAGGC GCAGCTGAAG AGCGACCACC TGAACAGTTC GCTGAGCCTG
GGGCACATTA CGCGGATCGA CGGCACGGCA GGCCGGCAGA ATCCACGCGG CCAGGGCTAT
GCGCTGGATA CCGAGGGGCA CGGCGTGAAC CGTGCCGCCG CCGGCTTGCA GCTCACCACC
GAAGCCTTGC CTGCCGGGCA GCGCCACATG ATGGATGTGG GCGAGCCGGT GGCGCGGCTG
ACGGTGGCGC ACGACATGCA CGAGCGCTTG TCGGAGGCGG CGCGCACAGC CGGGGCGCAG
CAGGCAGACG ACCAGGACGA AGTGGCCCGC AGCCTGAAGC AGCAGAATGC CGACCTGAAG
GGCAGCGGCG GCGACCCGGC GCAAGGGCGG TTCCCCGAGT TCCAGCAGCC ACACCTGATG
CTGGCCAGCC CGGCCGGGAT CGAGAGCAGC ACGGCGGGCA GCACGCATCA GCAGAGCAAC
GCACACCACG CGATCACCAG CGGCGGGCAC GCCAGCATTG CCACCGGGCG CAGCTTCCTC
GCCAGTGCCA AGGATGCGAT CCGGCTGTTT GCCTACCGGC TCGGTTTGAA GCTGGTGGCC
GCGAGCGGCG ACATCGACAT GCAAGCGCTC AAAAACGGCA TCAACATCCT GGCGAAGCTG
GAGATCAAGA TGGAGGGCAA GCGGGTGGAC ATCAACGGAA CGGATAGCGT GCGCATCAAC
GGGGGCGGCA GCTATATCGA CGTGAGCGCG GCGGGAATCG TGCATGGCAC CAATGGCGCT
TTCCAGGTGC ATGCGGGCAA CCATTCGTTC GCGGGGCCGG ATAGCCGGCC GGTGGTGCCA
CACGCGGTTG CGTCAGCGCT GAAGCCCGAC GAACCCATGC CCGTAGTGGA CGCGCTGGGC
AACGTTCTGC CAGACAGCCG CGTCATCGTT CGGCCCGGCC AGAACGAAAC GCGCATGGGC
ATTGATGGAG GAAAGATCGA TCCTGAGACA GCACTCAATC AACACGTGCT CCGACGCTGG
CGCCCCCGGC GAGGTTGA
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| Protein sequence | MLGLSFPKDD APTATDPRGR SFPVQMVVER LEAQEGLGQD FRFELTLLAD HAGLVLADML
GKLLAVSLVK PDGTLRWFTG HVAEFSLVGS DPGVATYRAV LRPWLWFARQ RVNNRVFRDR
TLYQQIADIL QGHGDWALWQ WDVSGDDVPF TMAVQGGGEG ESEHNYIHRR LEARGWTYYY
KHDATGHQLV IIDSNSQCPP VDGNDPRIPF QAEGGPQEEN AIQRWTPVQT AVAALFAASA
FDFKRPQARH HTESTQRKQG RVPELETHEY VGHYGFRKED PTGAALLNLR REEIEAHAQQ
YQAEGNNSSV VCGGWFYLFG HFSNTEREED SQYLIVAASH SASNNYPAEL GRQGGHTAEP
LPGRKGEYRN RFTAIKRAVP WRPGRGRNSV EVKVDGHQTA RVVGRDGLGA VDVDEHGRIL
IQFHWDREGK HSARVRVASN WAGGETGMVS WPRVGSEVLV VALDGNPDHF LVIGVVHNAQ
RMPPWQLPTQ GVLMGIRSRE LTPDGGNDPG GRSNLLALDD TAGRIQAQLK SDHLNSSLSL
GHITRIDGTA GRQNPRGQGY ALDTEGHGVN RAAAGLQLTT EALPAGQRHM MDVGEPVARL
TVAHDMHERL SEAARTAGAQ QADDQDEVAR SLKQQNADLK GSGGDPAQGR FPEFQQPHLM
LASPAGIESS TAGSTHQQSN AHHAITSGGH ASIATGRSFL ASAKDAIRLF AYRLGLKLVA
ASGDIDMQAL KNGINILAKL EIKMEGKRVD INGTDSVRIN GGGSYIDVSA AGIVHGTNGA
FQVHAGNHSF AGPDSRPVVP HAVASALKPD EPMPVVDALG NVLPDSRVIV RPGQNETRMG
IDGGKIDPET ALNQHVLRRW RPRRG
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