Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1757 |
Symbol | |
ID | 1220595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 1880890 |
End bp | 1882419 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637238149 |
Product | lysine-specific permease transmembrane protein |
Protein accession | NP_519878 |
Protein GI | 17546476 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0833] Amino acid transporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.425351 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.34059 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATACAC CGATCACCCC CACCGGCCTC GAGGGCCAGT CCGAACTGCG CCGGCGCCTG CGCGCGCGCC ACCTGACGAT GATCGCCCTC GGCGGCGCCA TCGGCACCGG GCTGTTCGTC GCCTCCGGCG CCTCCATCGC GCAGGCCGGC CCGGGCGGCG CCCTGTTCAC CTACACGCTG ATCGGCGTGA TGGTCTACTG CCTGATGACG AGCCTCGGCG AGCTGGCGGT GCACCTGCCG GTGTCGGGCT CCTTCGTCAC GTACAGCCGG CTGTACGTGG AGGAAGGGTT CGGCTTTGCG CTGGGGTGGA ATTACTGGTT TGCGCTGGCG GTGTCCGTGG CGGTGGAGCT GGCGGCGGCG CAGCTGGTGA TGAAGTACTG GTTCCCCGGC GTCTCGGGCA TGGTCTGGAG CGCCGCCTTC CTGCTGCTGA TGTTCGTGCT CAACGCGTTC TCGGTGCGCG GCTTCGGTGA GGCGGAATAC TGGTTCTCGA TGATCAAGGT GGTGACCATC GTCGTGTTCC TGCTGATCGG GCTGGCGATG ATCTTCGGCA TCATGAAAGG CGGGCCGCAG TCGGGCTGGC ACAACTTCAC GGTGGGCGAC GCGCCGTTCG TGGGCGGACT GCCTGCGATG ATCGGCGTGG CGATGATCGC CGGGTTCTCG TTCCAGGGCG TCGAGACCAT CGGCGTGGCC GCCGGCGAGG CGGAGAACCC CGCCCGCACC ATTCCGCGCG GCATCCGCCA GACCTTCTGG CGCATCCTGC TGTTCTACGT GCTGGCGATC CTGATCATCG CCGTGCTGCT GCCGTACACC GATCCGAACC TGCTGCGCAA CGAGGCCACC GACATCGGCG TAAGCCCGTT CGCGCTGGTG TTCCAGCATG CCGGCCTCGC CTTCGCCGCC GGCATGATGA ACGCGGTGGT GCTGACCGCG CTGCTGTCGT CCGGCACCTC GAGCCTGTAT GTCTCGACGC GCATCCTCTA CGACCTCGCG CTTGAAGGCC AGGCGCCGCG GTGGTTCGCC AGGGTCTCGG GCAACGGCGT GCCGCACCGG GCGCTGCTGG CCACCTCGGC GGTGGGCGCG CTGTGCTTCT TCAGCTCGCT CTTCGGCGAC CAGGTCGTGT ACCTGTGGCT GCTCAATACC TCGGCGGTGA CGTGCTTCAT CGCCTGGTTC GGCATCGCGC TGGCGCACTA CCGCTTCCGC AAGGGCTTTC TGCATCAGGG CCACACGGTC GATCAGCTCG AATACCGCTC GCCCTTCTTC CCGTTCGGGC CGATCCTGGT GGCCGCCCTG TGCGTGATCA TCATCCTCGG GCAGAACACC AAGGCGCTGT TCGCGCCGAT CGACAACTTC GGCGCCTTCG TCGCCACGTA TTGCGGGGTG TTTCTGTTCG TGGCGATCTG GCTGGGGTAC CGGTGGCGCT ACAAGACGCG GTTTGTGCGG TACGAGCAGA TGCAGTTCAG CCCGCGGCAC ATCCGGGCGG CGCAGGCCGG GGATGGCGGG GCCGCGCTGC CGGGCGTGGC CGCGGATTAG
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Protein sequence | MHTPITPTGL EGQSELRRRL RARHLTMIAL GGAIGTGLFV ASGASIAQAG PGGALFTYTL IGVMVYCLMT SLGELAVHLP VSGSFVTYSR LYVEEGFGFA LGWNYWFALA VSVAVELAAA QLVMKYWFPG VSGMVWSAAF LLLMFVLNAF SVRGFGEAEY WFSMIKVVTI VVFLLIGLAM IFGIMKGGPQ SGWHNFTVGD APFVGGLPAM IGVAMIAGFS FQGVETIGVA AGEAENPART IPRGIRQTFW RILLFYVLAI LIIAVLLPYT DPNLLRNEAT DIGVSPFALV FQHAGLAFAA GMMNAVVLTA LLSSGTSSLY VSTRILYDLA LEGQAPRWFA RVSGNGVPHR ALLATSAVGA LCFFSSLFGD QVVYLWLLNT SAVTCFIAWF GIALAHYRFR KGFLHQGHTV DQLEYRSPFF PFGPILVAAL CVIIILGQNT KALFAPIDNF GAFVATYCGV FLFVAIWLGY RWRYKTRFVR YEQMQFSPRH IRAAQAGDGG AALPGVAAD
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