Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1749 |
Symbol | alkK |
ID | 1220587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1870828 |
End bp | 1872456 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637238141 |
Product | long-chain-fatty-acid--CoA ligase |
Protein accession | NP_519870 |
Protein GI | 17546468 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0360029 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.897782 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGACACA TGATGAGCGC GCCCTTGCTC ATCTCGACCA TCATCGAACA TGCCGCGCGG AACTACGGTT CGACCGAAGT CGTGTCGCGC CGCGTGGAGG GCGATGGGGG CGAGCTCCAT CGCACCACGT ACGCGGCCGT GCGCGATCGC GCCAAGCAAC TGGCGAATGC GCTGGCCGCG CTCGGCGTGC AGCCCGGCGA GCGCATCGGC ACGCTGGCCT GGAACGGCTA CCGGCACCTG GAGATCTACT ACGGCGTGTC GGGCTCGGGC GCGGTGTGCC ACACCATCAA TCCGCGCCTG TTCCCCGACC AGGTCGCCTA CATCGTCAAC CACGCCGATG ATCAGTACGT CTTCTTCGAC CTGACCTTCG TGCCGCTGGT CGAGGGCCTC GCGCCGCATT GCCCGAACGT CAAGGGCTGG GTGGCGATGA CCGACCGCGC GCACATGCCG GCCTCCAGCG TGCCGATGCT GTGCTACGAA GACCTGCTGG CCGCGCAGCG CGCCGAGTAC ACCTGGCCGC TGTTCGACGA GAACACCGCC TCCAGCCTGT GCTACACGTC GGGCACGACC GGCAATCCGA AGGGGGCGCT GTATTCGCAC CGCTCCACCG TGCTGCATTC GTATGGGTCG GCGCTGCCCG ATGCGCTGGG CTGCTCGGCG CAGGACGTGA TCCTGCCGGT GGTGCCGATG TTCCACGTCA ATGCCTGGGG CCTGCCGTAT TCGGTGCCGC TGGTGGGCGC CAAGCTGGTG TTTCCGGGGC CGAAGCTGGA CGGCGCCTCG CTGTACGAAC TGTTCGAGCA GGAGCAGGTG AGCTTCTCCG CCGGCGTGCC GACGGTGTGG CTCGGCCTGC TGCAGCACGT GCAGGGCAAG GGCCTGAAGT TTTCGTCGTT CCGCCGTACG GTGATCGGCG GCTCGGCGTG CCCGCCGGCC ATGATCCGCA CGCTCAATGC GCTCGGCGTG GAGGTGATCC ACGCCTGGGG CATGACCGAG ATGTCGCCGC TGGGCACCAC CTGCAAGCTG ATGAGCAAGC ACAATGGCCT GCCGGACGAA ACCCGGCAGC AGGTGCTCGA GCGCCAGGGC CGCGCCATCT ACGGCGTGGA GATGAAGATC GTCGACGGCA ACGGCCACGA GCTGCCGTGG GACGGCAAGG CCTTCGGCGA CCTGCACGTG CGCGGGCCGT GGACCATCGC CAGCTACTAC CGCAACGGCC AGTCGCCGCT GGTCGACGGC TGGTTCCCGA CCGGCGACGT CGCCAACATC GACCCCGACG GCTACATGCA GATCACCGAT CGCAGCAAGG ACGTGATCAA GTCGGGCGGG GAGTGGATCT CATCGATCGA CGTGGAGAAC GTGGCCGCCG CGCACCCGGC CGTGCACATG GCGGCGTGCA TCGCCTGCCG GCATCCGAAG TGGGACGAGC GCCCGCTGCT GGTGGTGATG AAGAAACCGG GCGCGGAGCT GACGCGCGAC GAAATGCTGC GCTACTTCGA GGGCAAGGTC GCCAAGTGGT GGATTCCGGA CGACGTGGTG TTCGTCACCG AGATCCCGCT CACGGCCACC GGCAAGATGC AGAAGCTCAA GCTGCGCGAG CAGTTCCGCG ACTACCAGTT GCCGCTCGCG CAGGCTTAG
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Protein sequence | MGHMMSAPLL ISTIIEHAAR NYGSTEVVSR RVEGDGGELH RTTYAAVRDR AKQLANALAA LGVQPGERIG TLAWNGYRHL EIYYGVSGSG AVCHTINPRL FPDQVAYIVN HADDQYVFFD LTFVPLVEGL APHCPNVKGW VAMTDRAHMP ASSVPMLCYE DLLAAQRAEY TWPLFDENTA SSLCYTSGTT GNPKGALYSH RSTVLHSYGS ALPDALGCSA QDVILPVVPM FHVNAWGLPY SVPLVGAKLV FPGPKLDGAS LYELFEQEQV SFSAGVPTVW LGLLQHVQGK GLKFSSFRRT VIGGSACPPA MIRTLNALGV EVIHAWGMTE MSPLGTTCKL MSKHNGLPDE TRQQVLERQG RAIYGVEMKI VDGNGHELPW DGKAFGDLHV RGPWTIASYY RNGQSPLVDG WFPTGDVANI DPDGYMQITD RSKDVIKSGG EWISSIDVEN VAAAHPAVHM AACIACRHPK WDERPLLVVM KKPGAELTRD EMLRYFEGKV AKWWIPDDVV FVTEIPLTAT GKMQKLKLRE QFRDYQLPLA QA
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