Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1654 |
Symbol | |
ID | 1220489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1778487 |
End bp | 1781606 |
Gene Length | 3120 bp |
Protein Length | 1039 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637238043 |
Product | transmembrane drug efflux protein |
Protein accession | NP_519775 |
Protein GI | 17546373 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.556775 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACACT CCCGTTTCAA CCTGTCACGC TGGGCGCTCG AGCATCAGCC GCTGACCCGC TTCCTGCTGG TGGCGCTGCT GCTCGGCGGC ATCTTCGCCT ATACCCAACT CGGTCAGGAC GAAGACCCGC CCTTCACCTT CCGCGCAATG GTGGTGCAGG CGTTCTGGCC TGGCGCGACC GCCGAGCAGA TGTCGCGCCA GGTGACCGAC AAGATCGAAA AGGCGCTGCA GGAAGTGCCA TACGCCTGGA AGATCCGCAG CTATTCCAAG CCCGGCGAGA CGCTCGTCAC CTTCCAGCTG GCCGACACCT CGCCGACCAA GGATACGCAG CAGCTCTGGT ACACGGTGCG CAAGAAGGTG GGCGATATCG CGTCTTCGCT GCCGACCGGC GTGCGTGGAC CGTACTTCAA CGATGATTTC GGCGATGTGT ACGGCTCCAT CTATGCGCTG TCCGCCGACG GCTTCACCTA CCGCCAGCTC AACGACTACG CCGATGCGAT CCGCCAGCAA CTGCTGCGCG TGCCCAACGT CGCCAAGGTC ACCCTGCTCG GCGACCAGGA CGAGAAGATC TACATCGAGT TCCAGCAGGC CAAGTTCGCG CAGATGGGGC TGGACATCAA CAGCATTGCC AACCAGATCG CGCAGCAGAA CAACATCGGC CCCAGCGGCG TGCTGGTCAC GCCGACGGAC AACGTGCAGA TCCGCCTGTC CGGCCAGTTC TCGGACATCC GCGACCTGGA GAACCTGACC CTGCGCGGCC CCGGCGGCAC CAGCAATATC CGCCTGGGCG ACATCGCCAC CATCCGGCAC GGCTACATCG ATCCGCCGCG CGCCAAGATG CGCTTCAACG GCAAGGAGGT GATCGGGCTG GGCATCTCGA TGGCCAAGGG CGGCGACATC ATCCAGCTCG GCAAGGACCT GCGCGCCACG GTGGAGCGCA TCCGCGCGAA GCTGCCGGTC GGCATCGAGA TGCAGCAGGT GCAGGATCAG CCGCAGTCGG TGCAGCACTC CGTGGGCGAG TTCGTCCACG TGCTGATCGA GGCGGTGGTG ATCGTGCTGG CGGTGAGTTT CCTGTCGCTG GGCCTGCACA CCAAACCGCG CCTGCGCATC GATGTGTGGC CGGGGCTGGT GGTGGGCCTG ACGATCCCGC TGGTGCTGGC GGTGACGTTC CTGTTCATGA ACATCTTCGA CATCGGGCTG CACAAGATCT CGCTGGGCGC GCTGATCATC GCGCTGGGCC TGCTGGTGGA CGACGCGATC ATCGCGGTCG AGATGATGGT GCGCAAGCTG GAGGAGGGCT TCTCCAAGAT GGAGGCCGCC ACCTTCGCCT ACACCTCCAC CGCCATGCCG ATGCTGACCG GCACGCTGAT CACCGCCACG GGCTTCCTGC CGGTGGGCCT GGCGCGCTCG ACGGTGGGCG AGTACACCTT CGGCATCTTC GCGGTGACGG CGCTGGCGCT GGTGTTGTCG TGGGTCGCGG CGGTGGTGTT CGTGCCGTAT CTGGGCTACC TGCTGCTGCA TACGAAATCG CACGTGGGCG ACGGCGGCCA TCACGAGCTG TTCGACACGC CGTTCTACAA TCGCTTCCGC GGCTGGGTGA ACTGGTGCGT GGAATACCGC AAGACGGTGA TCGTCATCAC GCTGGCGGCC TTCGTGCTGG GCGTGTTCGG CTTCAAGTAT GTCGAGAAGC AGTTCTTCCC CGACTCCAGC CGGCCCGAGC TGATGGTGGA GCTGTGGCTG CCGGAAGGCG CCAGCTTCGG CCAGACCGAG GCCGAGGCCA AGCGCTTCGA GGCGCTGATC CGCCAGCAGA AAAGCGTGGA GAGCGTGGCG TTCTTCATCG GCTCCGGTGC GCCGCGCTTC TACCTGCCGC TGGACCAGAT CCTGCCGCAG ACCAACGTGG CGCAGGCCAT CGTGATGCCG ACTTCGCTGG AGACGCGCGA GGACGTGCGG CAGGAGATCA TCGGCCTGCT GAAGTCGCAG TTCCCGCAGC TGCGCGGCCG CGTCAAGCTG CTGCCGAACG GGCCGCCGGT GCCGTATCCG GTGCAGTTCC GGGTGATGGG GCCGGACATC GGCGGCGTGC GCAAGATCGC CGACCAGGTC AAGGCCATCA TGCAGGCCAA TCCCAACACC GTGGGCGTGA ACGACAACTG GAACGAGAAC GTCAAGCTGC TGCGCCTGGA TATCGATCAG GACAAGGCGC GCGCGCTCGG CGTGACCACC GGTTCGATCG CCCAGGTGAC GCAGACCGTG ATGTCCGGCG CGCCCATCGC CCAGTACCGC GACGGCGACA AGCTGCTCGA CATCGTGATG CGCCCGCAGG AGCGCGAGCG CAACACGCTC GACGCCCTGC AGAACGTGCA GGTGCCGACC GCCAGCGGCC GGGTGGTGCC GCTCACGCAG GTTGCGCGCG TGGGCTTTGC GTGGGAACCG GGCGTGATCT GGCGCGAGAA CCGCGACTAC GGCATCACCG TGCAGTCCGA CGTGGTGGAC GGCGTGCAGG GGCCGACCGT GACGGCGCAG ATCAACCCGC TGCTCGACAA GATCCGCGCC GACCTGCCGC CGGACTACCA GATCAAGATC GCCGGGGCGG AGGAGGAGAG CGCCAACGCG GGCGCCTCCA TCGTCGCGCA GATGCCGCTG TGCATCTTCA TCATCTTCAC GCTGCTGATG CTCCAGCTGC ACAGCTTCTC GCGTTCGGTG ATGGTGTTCC TGACCGGCCC GCTGGGGCTG ATCGGCGCGG CCGCGACGCT GCTGCTGCTG CGTGCGCCGA TGGGCTTCGT GGCGCAGCTG GGCATCACCG CGCTGATCGG CATGATCATC CGCAACTCGG TGATCCTGGT CGACCAGATC GAGCAGGATG TGGCGACCGG CGTGCCCACC TGGACCGCCA TCGTCGAGGC GGCGGTGCGG CGCTTCCGTC CCATCATCCT GACGGCGGCC GCGGCGGTGC TGGCGATGAT CCCGCTGTCG CGCAGCGTGT TCTGGGGGCC GATGGCGGCG GCCATCATGG GCGGCCTGAT CGTCGCCACG GTGCTGACGC TGCTGTTCCT GCCGGCGCTG TATGCCGCGT GGTTCCGCGT CAAGCGCCCG GAAGCCGAGG CGGCCGCGCC GACCGCCTGA
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Protein sequence | MEHSRFNLSR WALEHQPLTR FLLVALLLGG IFAYTQLGQD EDPPFTFRAM VVQAFWPGAT AEQMSRQVTD KIEKALQEVP YAWKIRSYSK PGETLVTFQL ADTSPTKDTQ QLWYTVRKKV GDIASSLPTG VRGPYFNDDF GDVYGSIYAL SADGFTYRQL NDYADAIRQQ LLRVPNVAKV TLLGDQDEKI YIEFQQAKFA QMGLDINSIA NQIAQQNNIG PSGVLVTPTD NVQIRLSGQF SDIRDLENLT LRGPGGTSNI RLGDIATIRH GYIDPPRAKM RFNGKEVIGL GISMAKGGDI IQLGKDLRAT VERIRAKLPV GIEMQQVQDQ PQSVQHSVGE FVHVLIEAVV IVLAVSFLSL GLHTKPRLRI DVWPGLVVGL TIPLVLAVTF LFMNIFDIGL HKISLGALII ALGLLVDDAI IAVEMMVRKL EEGFSKMEAA TFAYTSTAMP MLTGTLITAT GFLPVGLARS TVGEYTFGIF AVTALALVLS WVAAVVFVPY LGYLLLHTKS HVGDGGHHEL FDTPFYNRFR GWVNWCVEYR KTVIVITLAA FVLGVFGFKY VEKQFFPDSS RPELMVELWL PEGASFGQTE AEAKRFEALI RQQKSVESVA FFIGSGAPRF YLPLDQILPQ TNVAQAIVMP TSLETREDVR QEIIGLLKSQ FPQLRGRVKL LPNGPPVPYP VQFRVMGPDI GGVRKIADQV KAIMQANPNT VGVNDNWNEN VKLLRLDIDQ DKARALGVTT GSIAQVTQTV MSGAPIAQYR DGDKLLDIVM RPQERERNTL DALQNVQVPT ASGRVVPLTQ VARVGFAWEP GVIWRENRDY GITVQSDVVD GVQGPTVTAQ INPLLDKIRA DLPPDYQIKI AGAEEESANA GASIVAQMPL CIFIIFTLLM LQLHSFSRSV MVFLTGPLGL IGAAATLLLL RAPMGFVAQL GITALIGMII RNSVILVDQI EQDVATGVPT WTAIVEAAVR RFRPIILTAA AAVLAMIPLS RSVFWGPMAA AIMGGLIVAT VLTLLFLPAL YAAWFRVKRP EAEAAAPTA
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