Gene RSc1644 details

Gene Information

• Locus tag: RSc1644
• Symbol: ispF
• ID: 1220479
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 1768665
• End bp: 1769171
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 637238033
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: NP_519765
• Protein GI: 17546363
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.409622
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACTGGA TGGACATCCG CATCGGCCAG GGCTACGACG TGCACGCGCT GGTGGAGGGC 
CGCAAGCTGA TCCTGGGCGG CGTGGAGATT CCGCACACGC GCGGCCTGCT CGGCCATTCC 
GACGCCGATG CGCTGCTGCA CGCCATCACC GACGCGCTGT TCGGCGCGGC CGGCCTGGGC 
GACATCGGCC GGCATTTTCC CGACACCGAC CCGGCGTTCG CCGGCGCCGA CAGCCGCGTG 
CTGCTGCGCG AGGCGGTGCG CCGCGTGCGC GAGGCGGGCT ACGACGTGGG CAACGTCGAC 
GCCACCGTCA TCGCGCAGAA GCCCAAGCTG GCGCCGCACG TGCCCGGCAT GGTGGCCAAC 
CTTGCGGCCG ACCTGGGCAT CGCGCCCGGG CGCTGCAACG TCAAGGCCAA GACCAACGAG 
AAGCTGGGGT TCGAGGGGCG GGAAGACGGT ATCGTTGCCC AGGCTGCCGT GCTGATCTAC 
CGCGCCGAAG CCGCCGAGCA GGACTGA 

 

Protein sequence

MNWMDIRIGQ GYDVHALVEG RKLILGGVEI PHTRGLLGHS DADALLHAIT DALFGAAGLG 
DIGRHFPDTD PAFAGADSRV LLREAVRRVR EAGYDVGNVD ATVIAQKPKL APHVPGMVAN 
LAADLGIAPG RCNVKAKTNE KLGFEGREDG IVAQAAVLIY RAEAAEQD