| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1516 |
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| Symbol | |
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| ID | 1220345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1617229 |
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| End bp | 1618584 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637237899 |
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| Product | putative membrane-bound lytic murein transglycosylase-like lipoprotein |
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| Protein accession | NP_519637 |
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| Protein GI | 17546235 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.892802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGACTTC TCGCGGCATC TGTGTTCAGT CTGCTTCTGG CAGCCTGTGC CACGGGCCCC
GCTCCGAATG CCGACACCGC CAGCACAAGC GCCGTTTCCT CCACGTCCGG CAAAGATGCG
CCGGTCGTTA ATGTCGATCA GCAGCCCGTG GCCTCCCTCA AGGGGCCGGC CAAGGACCTG
TGGGCGCGCA TCCGCCAAGG TTTCTCCATG CCCGACCTGC AGAGTTCGGC CGTGGACGAC
CGCGCCGACT GGTATGCCCA GCGCCCCGAG GCGTTCCGCC GCATGGTGGA CCGCTCCAAC
CGCTACCTGT ATCACATCGT CGAGGAACTC GAACGGCGCA ACATGCCCAC CGAACTGGCC
CTGCTGCCGT TCGTGGAGAG CGCGTTCAAC CCGCAGGCGG TCTCCAGCGC CAAGGCGGCC
GGTATGTGGC AGTTCATCCC GAGCACCGGC AAGACCTACA ACCTCCGGCA AAACGTTTTC
CAGGACGAGC GCCGCGACGT GCTGGCCTCG ACCGATGCCG CGCTGGACTA CCTGTCCAAG
CTGCACGACC AGTTCGGCGA CTGGCAACTG GCGCTGGCCG CCTACAACTG GGGCGAGGGC
GCGGTGGCGC GGGCGATCGC GCGCAACCAG GCGGCCGGGC TGTCGGCCGA CTACCTCAAC
CTGAACATGC CCGCCGAGAC GCGCATGTAC GTGCCCAAGC TCCAGGCGAT CAAGAACATC
ATCACCAGCC CGGAGCGCTA TGGCATCACG TTGCCGGACA TCCCCAACCA CCCGTACTTC
GTCACCGTCA CCACCTCGCG CGACATCGAC GTGACGCTGG CGGCGCGGCT GGCCAACCTG
CCGATCGACG AGTTCAAGGC GCTGAATCCG TCGTTCAACC GGCCGGTCAT CCTGGGCGCG
TCCAACCCGC AAATCCTGCT GCCGTACGAC AACGCCGAGA CATTCCAGTA CAACCTCAAC
ACCTATCGCG GCGGGCTGTC GAGCTGGACT GCCGTTACGG TCGGCAACCG CGAGCGCGTC
GAGGCGCTGG CCGCGCGGCT CAAGGTCGAT CCGGACACCA TCCGCGAGAT CAACCGCATT
CCCAAGGGCA TGCGCCTGAA GGCCGGCTCC ACCGTGGTGG TGCCGCGCGC CGAGGATGCC
AAGGAGGACG CCCCCGACAT CAGCCCCGAG CTGGCCGAGA ACGCCACCAT GACGGTCGAG
CCCGACGTGC CCGACCTGCG CCGCGTGGTG GTGCGCGCCG GCAGGCGGGA TACGCTGGCG
GGCCTGTCGC ACCGCTATGG CGTGTCGGTG GCGCACTGCG CGCGTGGAAC CAGCTGTCCG
GAGACGCGAT CCCGAAGGGG CGCAACGTGG TCCTGA
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| Protein sequence | MRLLAASVFS LLLAACATGP APNADTASTS AVSSTSGKDA PVVNVDQQPV ASLKGPAKDL
WARIRQGFSM PDLQSSAVDD RADWYAQRPE AFRRMVDRSN RYLYHIVEEL ERRNMPTELA
LLPFVESAFN PQAVSSAKAA GMWQFIPSTG KTYNLRQNVF QDERRDVLAS TDAALDYLSK
LHDQFGDWQL ALAAYNWGEG AVARAIARNQ AAGLSADYLN LNMPAETRMY VPKLQAIKNI
ITSPERYGIT LPDIPNHPYF VTVTTSRDID VTLAARLANL PIDEFKALNP SFNRPVILGA
SNPQILLPYD NAETFQYNLN TYRGGLSSWT AVTVGNRERV EALAARLKVD PDTIREINRI
PKGMRLKAGS TVVVPRAEDA KEDAPDISPE LAENATMTVE PDVPDLRRVV VRAGRRDTLA
GLSHRYGVSV AHCARGTSCP ETRSRRGATW S
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