Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1458 |
Symbol | |
ID | 1220287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 1558924 |
End bp | 1560783 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637237841 |
Product | hypothetical protein |
Protein accession | NP_519579 |
Protein GI | 17546177 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.412179 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTCAA GAATCGAAGA TTACGCGCTG ATCGGTGATT GCGAAACCGC CGCCCTGGTG TCTCGCGACG GCTCGATCGA CTGGCTGTGC TGGCCCCGGT TCGATTCCGG CGCCTGTTTC GCCGCGCTGC TCGGCACGCC CGACCACGGC CGCTGGCGCA TCGCCCCGCA AGGCCCCATC CGCGCCGTCC GCCGCCGCTA CCTGCCCGGC ACGCTGATCC TGGAGACCGT GTTCGAGACC GACACCGGCA CCGCCAGCCT GACCGATCTG ATGCCCTCCC GCCTGCCGGG CACCCCCAGC GCGCGCGAAG ACACCTCCGA CCTGGTGCGC ATCGTGCGCG GGCTGTCAGG TACCGTCGCC ATGCGCATGG ACCTCACGCT GCGCTTTGAC TACGGCGCCT CCGTCCCGTG GGTCAGCCGC GTGACGGAAG AAACCGGCGC CGTGTCCGAC GACCCGTGCG AGATGCCCGG CTGCGTACTG CGCGCCATCG CCGGCCCCGA CATGGTGGTG CTGCGCACGC CGGCGCAGGT GCGCGGCGAG AACCTGTCCA CCGTCGCCGA GTTTGCCGTG GCAGCCGGCG AGGCGATGCC CTTCGTGCTG ACGCATTCGC CATCGCACCG GCCGCTGCCC GCATCGATCG ATGCCATCGA AGCCCAGCGC GACACGGAGC CCCGCTGGCG CGCCTGGTCC GGCCGCTGCC GGGGCGCCGG CGAATGGGCC GAGGCCATCG AGCGCTCCCT CATCACGCTC AAGGCGCTGA CCTATCATCC GACCGGCGGC CTGGTGGCCG CGCCCACCAC CTCCTTGCCC GAACAGCCCG GCGGCGTGCG CAACTGGGAC TACCGCTACT GCTGGCTGCG CGATGCCACC CTGACCCTGC TCGCGCTGAT GAACGCGGGC TACTACAGCG AAGCCCGCGC CTGGCGCGCA TGGCTGGAGC GCGCGGTGGC CGGCAGCCCG GCGCAGATCC AGATCATGTA CGGCATCGCC GGCGAACGCC GCCTGGGCGA GTGGACCGTG CCGTGGCTGC CCGGCTACGA AGGCGCGCAG CCGGTGCGCA TCGGCAACGC GGCGGCCGTG CAACTGCAGC TGGACGTGTA CGGCGAGCTG ATGGACGCGC TCTACATCGC CCGCAAGGGC GGCCTGGACG GCGACGCGGC CTCCTGGCGC CTGCAGGTCG CGCTGATGAC GCACCTCGAA GCCGCCTGGC AGTCGCCCGA CGAGGGGATC TGGGAGGTGC GCGGCCCGGC GCGGCATTTC ACGCATTCCA AGGTGATGGC GTGGGTCGCG TTCGACCGCG CGGTCAAGAC CATCGAACAG TTCGGCCTGG ACGGCCCGCT GGCCCGCTGG CGGGCCGTGC GCGACCGCAT CCACGACGAG GTCTGCCGCC ACGGCTACAG TGCCGAACGC GGCTGCTTCG TGCAGAGCTA CGGCAGCCGC GAAATGGATG CCGCCCTGCT GATGCTGCCG CTGGTCGGTT TCCTGCCTGC ATCCGATCTG CGCATCCAGC GCACCGTGCG CGCCATCGAA GACGACCTGC TGGCCGACGG CCTGGTGCGC CGCTATCGCA CCGAAGCCGT GACGGATGGA CTGCCCGCCG GCGAAGGCGT GTTCCTCGCC TGCAGCTTCT GGTACGTCGA CAACCTCGTG CTGCAGGGCC GCCACGACGA AGCCCGGGCG CTGTTCGCCA AGCTGCTCGC GCTGCGCAAC GACGTGGGCC TGCTGGCCGA GGAATACGAT CCCGGCTCGG GCCGCATGCT CGGCAACTTC CCGCAGGCGT TCTCGCATAT CGCGCTGGTG AACTCGGCGC TGGCGCTGTG CGCGGCGGCC GATCACGTCG GCCAGCGCAC CGGCACCTGA
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Protein sequence | MPSRIEDYAL IGDCETAALV SRDGSIDWLC WPRFDSGACF AALLGTPDHG RWRIAPQGPI RAVRRRYLPG TLILETVFET DTGTASLTDL MPSRLPGTPS AREDTSDLVR IVRGLSGTVA MRMDLTLRFD YGASVPWVSR VTEETGAVSD DPCEMPGCVL RAIAGPDMVV LRTPAQVRGE NLSTVAEFAV AAGEAMPFVL THSPSHRPLP ASIDAIEAQR DTEPRWRAWS GRCRGAGEWA EAIERSLITL KALTYHPTGG LVAAPTTSLP EQPGGVRNWD YRYCWLRDAT LTLLALMNAG YYSEARAWRA WLERAVAGSP AQIQIMYGIA GERRLGEWTV PWLPGYEGAQ PVRIGNAAAV QLQLDVYGEL MDALYIARKG GLDGDAASWR LQVALMTHLE AAWQSPDEGI WEVRGPARHF THSKVMAWVA FDRAVKTIEQ FGLDGPLARW RAVRDRIHDE VCRHGYSAER GCFVQSYGSR EMDAALLMLP LVGFLPASDL RIQRTVRAIE DDLLADGLVR RYRTEAVTDG LPAGEGVFLA CSFWYVDNLV LQGRHDEARA LFAKLLALRN DVGLLAEEYD PGSGRMLGNF PQAFSHIALV NSALALCAAA DHVGQRTGT
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