| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1453 |
|---|
| Symbol | |
|---|
| ID | 1220282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1554140 |
|---|
| End bp | 1555762 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637237836 |
|---|
| Product | ABC transporter ATP-binding protein |
|---|
| Protein accession | NP_519574 |
|---|
| Protein GI | 17546172 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.657517 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.782574 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTTCCA CCGCCAACAT CACCATGCAG TTCGGGCCCA AGCCCTTGTT CGAGAACATC
TCGGTCAAGT TCGGCGAGGG CAATCGCTAT GGCCTGATCG GCGCCAACGG CTGCGGCAAG
TCGACCTTCA TGAAGATCCT GGGCAGCGAT CTGGAGCCGA GCGCAGGCAA TGTGATGCTG
GAGCCGGGCG TGCGCCTGGG CAAGCTGCGC CAGGACCAGT TCGCCTACGA AGACATGCGC
GTGCTCGACG TGGTGATGAT GGGCCACACC GAGATGTGGG CCGCCGCGCA GGAGCGCGAC
GCCATCTACG CCAACCCGGA AGCGACCGAC GACGACTACA TGAAGGCCGC CGACCTGGAG
GCCAAGTACG CCGAATACGA CGGCTACACC GCTGAGGCCC GCGCGGGCGA ACTGCTGCTC
GGCGTCGGTA TCCCGATCGA TCAGCACAAC GGCCCGATGA GCAGCGTCGC CCCCGGCTGG
AAGCTGCGCG TGCTGCTGGC GCAGGCGCTG TTCTCGAATC CGGACGTGCT GCTGCTGGAC
GAGCCGACCA ACAACCTCGA CATCAACACG ATCCGCTGGC TGGAATCGGT GCTCAACGAG
CGCAATTCCA CCATGATCAT CATCTCCCAC GATCGCCACT TCCTGAACTC GGTCTGTACC
CACATGGCCG ACATGGACTA CGGCACGCTC AAGGTCTACC CGGGCAACTA CGACGACTAC
ATGGAAGCCT CCATCCAGGC GCGCGAACGC CTGCAGGCCG CCAATGCGCG CGCCAAGGAG
CGCATCTCCG ACCTGCAGGA CTTCGTGCGC CGCTTCTCGG CCAACAAGTC CAAGGCGCGC
CAGGCCACGT CGCGCCTGAA GATGATCGAC AAGATCAAGG TGGAAGACAT CAAGCCGTCG
TCGCGCCAGA ACCCGTTCAT CCGCTTCGAG TTCGAGAAGA AGCTGCACAA CCTGGCGGTG
GAAGCCGAGA ACGCGCGCAA GACGTACGAC CGCAAGATCT TCGACGGCCT GACCATGGCC
GTGCGCGCCG GCGAGAAGAT CGCCATCATC GGCGAGAACG GCGCGGGCAA GACCACGCTG
CTGCGCTCGC TGCTCAACCA CTCGGTCAAG ACCGGTGTGC AGCGCGGCAT CGACGTGGAC
GGCGGCATCA TCAAGTGGGC CGAGCACGCC AACGTCGGCT ACATGCCGCA GGACACCTAC
GAAGAATTCC CCGAAGACCG CGACCTGATG GACTGGATGA GCCAGTGGAC GCAGGCCGGC
GACGACGACC AATCGCTGCG CGGCACGATG GGCCGCCTGC TGTTCTCGGC CGACGACATC
AAGAAGAGCG TCAAGGTGCT CTCCGGCGGC GAGAAGGGCC GCATGATCTG GGGCAAGCTG
ATGCTGGGCC GCCACAACGT GCTGGCGCTG GACGAGCCGA CCAACCACAT GGACATGGAG
TCGATCGAGT CGCTGCAGGT CGCGCTGGAC AAGTTCGAGG GCACGCTGAT CTTCGTCTCG
CACGACCGCG AGTTCGTCAG CGGCCTGGCC ACGCGCGTCA TCGAAGTGCG GCCGGACGGC
ACGCTGACCG ACTACCTCGG CACGTATGAC GAGTATCTGC AGAGCCAGGG CGTGGAGGTC
TGA
|
|---|
| Protein sequence | MLSTANITMQ FGPKPLFENI SVKFGEGNRY GLIGANGCGK STFMKILGSD LEPSAGNVML
EPGVRLGKLR QDQFAYEDMR VLDVVMMGHT EMWAAAQERD AIYANPEATD DDYMKAADLE
AKYAEYDGYT AEARAGELLL GVGIPIDQHN GPMSSVAPGW KLRVLLAQAL FSNPDVLLLD
EPTNNLDINT IRWLESVLNE RNSTMIIISH DRHFLNSVCT HMADMDYGTL KVYPGNYDDY
MEASIQARER LQAANARAKE RISDLQDFVR RFSANKSKAR QATSRLKMID KIKVEDIKPS
SRQNPFIRFE FEKKLHNLAV EAENARKTYD RKIFDGLTMA VRAGEKIAII GENGAGKTTL
LRSLLNHSVK TGVQRGIDVD GGIIKWAEHA NVGYMPQDTY EEFPEDRDLM DWMSQWTQAG
DDDQSLRGTM GRLLFSADDI KKSVKVLSGG EKGRMIWGKL MLGRHNVLAL DEPTNHMDME
SIESLQVALD KFEGTLIFVS HDREFVSGLA TRVIEVRPDG TLTDYLGTYD EYLQSQGVEV
|
|---|
| |