Gene RSc1261 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1261 
SymbolntrC 
ID1220084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1340121 
End bp1341629 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content69% 
IMG OID637237638 
Productnitrogen assimilation regulatory response regulator transcription regulator protein 
Protein accessionNP_519382 
Protein GI17545980 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR01818] nitrogen regulation protein NR(I) 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.634694 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.380909 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCCAA TCTGGATCGT CGACGACGAT CAATCCATCC GCTGGGTCCT CGAGAAAGCG 
CTGGCGCGGG AGAGCCTGCT GTCGCGCAGC TTCACCAATG CTCGCGACGC GCTCAACGCG
CTCGAAGAAG AAACGCCGCA GGTGCTGATC TCCGACGTCC GCATGCCGGG CGGCTCGGGG
CTGGACCTGC TGCAGGCCAT CAAGGGCCGG CATCCGGGCC TGCCGGTCAT CATCATGACG
GCGTATTCCG ACCTGGACAG CGCCGTGGCG GCGTTCCAGG GCGGCGCCTT CGAATATCTC
GCCAAGCCGT TCGACGTGGA CCGCGCGGTC GAGCTGATCC GCCGCGCGCT GGAAGAGAGC
CTGCGCGAGG AAGAGATCGA CGACCGGTTG GGCGATGCGC CCGAGATCCT CGGTCAGGCG
CCGGCGATGC AGGATGTGTT CCGCGCCATC GGCCGGCTGT CGCAGTCGAA CGTGACGGTG
CTGATCACCG GCGAGTCCGG CACCGGCAAG GAGCTGGTGG CGCGCGCGCT GCACAAGCAC
AGCCCGCGGG CAAGCGGCCC GTTCATCGCG CTCAATACCG CGGCGATCCC CAAAGACCTG
CTGGAATCCG AGCTGTTCGG CCATGAGCGT GGCGCCTTTA CCGGCGCGCA GACCATGCGT
CGCGGACGCT TCGAGCAGGC CGAGGGCGGC ACGCTGTTCC TCGATGAGAT CGGCGACATG
CCGTTCGACC TGCAGACGCG CCTGCTGCGC GTGCTGTCGG ACGGGCATTT CTACCGGGTG
GGCGGCCACA ACCCGCTCAA GGCCAACGTG CGCGTCATCG CGGCCACGCA CCAGAACCTG
GAAACGCGCG TCAAGGACGG CCTGTTCCGC GAAGACCTGT TCCACCGCCT CAACGTGATC
CGCCTGCGGC TGCCGGCGTT GCGCGAGCGT CCGGAAGACA TCACGCTGCT GGCGCGGCAC
TTCCTGCAGA AGAGCGCGAA GGAGCTGGGC GTGGAGCCCA AGCGCATGTC GGACGAGGCG
TTGTCGCACA TCGCCACGCT GCCGTTCCCG GGCAACGTGC GCCAGCTCGA GAACCTCTGC
AACTGGCTGA CCGTGATGGC GCCGGCGCAG ACCATCGAGA TCAAGGATCT GCCGCATGAC
CTCGTGCGCG GCGCCAGCCA GATGCTGCCG GGCACGGCCG AGCTGATGGT GGCGGGGCGT
GCGGTGGCGG GCGAGCCGTC TTTCGGCGCC GATGCCCATG CCGCCGGCGC CGAGGCACCC
GTGGCCGCGG GCGCGGCGGC GGGGGCTTCC GCTATGTCCG GCTGGGAGCG CGCGCTGGCC
GGCGAGGCCA AGGCGATGCT CGAGGCCGGC CAGCCCGATG TCATGGATGC TCTGACCCGC
CGCTTCGAGC GGGCCATCCT CGAAGCCGCC CTCGGCGTCA CGCGTGGGCG CCGGGTCGAA
GCGGCCACGC GCCTGGGCAT CGGCCGCAAC ACCATCACCC GCAAATTGCA GGAGCTCGGC
TTCGACTGA
 
Protein sequence
MKPIWIVDDD QSIRWVLEKA LARESLLSRS FTNARDALNA LEEETPQVLI SDVRMPGGSG 
LDLLQAIKGR HPGLPVIIMT AYSDLDSAVA AFQGGAFEYL AKPFDVDRAV ELIRRALEES
LREEEIDDRL GDAPEILGQA PAMQDVFRAI GRLSQSNVTV LITGESGTGK ELVARALHKH
SPRASGPFIA LNTAAIPKDL LESELFGHER GAFTGAQTMR RGRFEQAEGG TLFLDEIGDM
PFDLQTRLLR VLSDGHFYRV GGHNPLKANV RVIAATHQNL ETRVKDGLFR EDLFHRLNVI
RLRLPALRER PEDITLLARH FLQKSAKELG VEPKRMSDEA LSHIATLPFP GNVRQLENLC
NWLTVMAPAQ TIEIKDLPHD LVRGASQMLP GTAELMVAGR AVAGEPSFGA DAHAAGAEAP
VAAGAAAGAS AMSGWERALA GEAKAMLEAG QPDVMDALTR RFERAILEAA LGVTRGRRVE
AATRLGIGRN TITRKLQELG FD