Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1261 |
Symbol | ntrC |
ID | 1220084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1340121 |
End bp | 1341629 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637237638 |
Product | nitrogen assimilation regulatory response regulator transcription regulator protein |
Protein accession | NP_519382 |
Protein GI | 17545980 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.634694 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.380909 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCCAA TCTGGATCGT CGACGACGAT CAATCCATCC GCTGGGTCCT CGAGAAAGCG CTGGCGCGGG AGAGCCTGCT GTCGCGCAGC TTCACCAATG CTCGCGACGC GCTCAACGCG CTCGAAGAAG AAACGCCGCA GGTGCTGATC TCCGACGTCC GCATGCCGGG CGGCTCGGGG CTGGACCTGC TGCAGGCCAT CAAGGGCCGG CATCCGGGCC TGCCGGTCAT CATCATGACG GCGTATTCCG ACCTGGACAG CGCCGTGGCG GCGTTCCAGG GCGGCGCCTT CGAATATCTC GCCAAGCCGT TCGACGTGGA CCGCGCGGTC GAGCTGATCC GCCGCGCGCT GGAAGAGAGC CTGCGCGAGG AAGAGATCGA CGACCGGTTG GGCGATGCGC CCGAGATCCT CGGTCAGGCG CCGGCGATGC AGGATGTGTT CCGCGCCATC GGCCGGCTGT CGCAGTCGAA CGTGACGGTG CTGATCACCG GCGAGTCCGG CACCGGCAAG GAGCTGGTGG CGCGCGCGCT GCACAAGCAC AGCCCGCGGG CAAGCGGCCC GTTCATCGCG CTCAATACCG CGGCGATCCC CAAAGACCTG CTGGAATCCG AGCTGTTCGG CCATGAGCGT GGCGCCTTTA CCGGCGCGCA GACCATGCGT CGCGGACGCT TCGAGCAGGC CGAGGGCGGC ACGCTGTTCC TCGATGAGAT CGGCGACATG CCGTTCGACC TGCAGACGCG CCTGCTGCGC GTGCTGTCGG ACGGGCATTT CTACCGGGTG GGCGGCCACA ACCCGCTCAA GGCCAACGTG CGCGTCATCG CGGCCACGCA CCAGAACCTG GAAACGCGCG TCAAGGACGG CCTGTTCCGC GAAGACCTGT TCCACCGCCT CAACGTGATC CGCCTGCGGC TGCCGGCGTT GCGCGAGCGT CCGGAAGACA TCACGCTGCT GGCGCGGCAC TTCCTGCAGA AGAGCGCGAA GGAGCTGGGC GTGGAGCCCA AGCGCATGTC GGACGAGGCG TTGTCGCACA TCGCCACGCT GCCGTTCCCG GGCAACGTGC GCCAGCTCGA GAACCTCTGC AACTGGCTGA CCGTGATGGC GCCGGCGCAG ACCATCGAGA TCAAGGATCT GCCGCATGAC CTCGTGCGCG GCGCCAGCCA GATGCTGCCG GGCACGGCCG AGCTGATGGT GGCGGGGCGT GCGGTGGCGG GCGAGCCGTC TTTCGGCGCC GATGCCCATG CCGCCGGCGC CGAGGCACCC GTGGCCGCGG GCGCGGCGGC GGGGGCTTCC GCTATGTCCG GCTGGGAGCG CGCGCTGGCC GGCGAGGCCA AGGCGATGCT CGAGGCCGGC CAGCCCGATG TCATGGATGC TCTGACCCGC CGCTTCGAGC GGGCCATCCT CGAAGCCGCC CTCGGCGTCA CGCGTGGGCG CCGGGTCGAA GCGGCCACGC GCCTGGGCAT CGGCCGCAAC ACCATCACCC GCAAATTGCA GGAGCTCGGC TTCGACTGA
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Protein sequence | MKPIWIVDDD QSIRWVLEKA LARESLLSRS FTNARDALNA LEEETPQVLI SDVRMPGGSG LDLLQAIKGR HPGLPVIIMT AYSDLDSAVA AFQGGAFEYL AKPFDVDRAV ELIRRALEES LREEEIDDRL GDAPEILGQA PAMQDVFRAI GRLSQSNVTV LITGESGTGK ELVARALHKH SPRASGPFIA LNTAAIPKDL LESELFGHER GAFTGAQTMR RGRFEQAEGG TLFLDEIGDM PFDLQTRLLR VLSDGHFYRV GGHNPLKANV RVIAATHQNL ETRVKDGLFR EDLFHRLNVI RLRLPALRER PEDITLLARH FLQKSAKELG VEPKRMSDEA LSHIATLPFP GNVRQLENLC NWLTVMAPAQ TIEIKDLPHD LVRGASQMLP GTAELMVAGR AVAGEPSFGA DAHAAGAEAP VAAGAAAGAS AMSGWERALA GEAKAMLEAG QPDVMDALTR RFERAILEAA LGVTRGRRVE AATRLGIGRN TITRKLQELG FD
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