| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1213 |
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| Symbol | pilF |
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| ID | 1220035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1281792 |
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| End bp | 1282583 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637237589 |
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| Product | putative type 4 fimbrial biogenesis protein |
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| Protein accession | NP_519334 |
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| Protein GI | 17545932 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.543413 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGCGTT GGTCGACTGC TGTCAGTCTG GTTTTCACAC TGGCCGCCGC CGGGTGCGCA
CTGCCGCCGC CACCGGCCCA GACGCAGGAC GTCAAGACGC TCTCCGATCA GACCGATATC
AGCCGGCGCG CCGCGATCCG GCTGCAGTTG GCGACGCAGT ACCTGGAGGC CGGGCAGGCC
GCCACGGCGC TCGACGAGGT CAAGAACGCC ATTGCGATCG ACCCGTCCGT GCCGGGGGCC
TACCATATCC GCGCGCTGGC TTATATGAGC CTTGGGCAGC ACGAACTGGC CGACGACAGT
TTCCGGCGCG CCCTGTCCAT GCAACCGAAC GATGGCGACC TGCTGAACAA CTACGGCTGG
TTCCTGTGCG CGCAGGGCGG CAAGCCCGAT CAGGGTATGG CGATGCTGCG CCAGGCCATC
GAGGCGCCCG CCGTCGGCAG TCCCTCCAAG CCGTGGACCA ACCTCGGCGT CTGCCAGATG
CGCCAGGGCG ATTTGGATGG CGCCGAGAAG AGCCTGACGC GCGCGACCTA TATCGATGCG
AACAATCCGC TGACCAATCT GACGCTGGCG CAGCTCCACT ACAAGCGCCG CGACTACGCG
CGCGCCATGT CGTTCATCGA ACGCGTCAAC GGCCGCGGCA ATCCGACGGC CGAGAGCCTG
TGGCTGGGCG CTCGCATCGC GCGCCGCCTG GGCGATGTTT CGCAGCAGAA TGCGTGGAGC
GCGCAGCTGC AGCGCCGTTT CCCCAATGCG CCCGAAGAGG CGGCTTTCGA GAGAGGAGCG
TGGGATGACT GA
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| Protein sequence | MKRWSTAVSL VFTLAAAGCA LPPPPAQTQD VKTLSDQTDI SRRAAIRLQL ATQYLEAGQA
ATALDEVKNA IAIDPSVPGA YHIRALAYMS LGQHELADDS FRRALSMQPN DGDLLNNYGW
FLCAQGGKPD QGMAMLRQAI EAPAVGSPSK PWTNLGVCQM RQGDLDGAEK SLTRATYIDA
NNPLTNLTLA QLHYKRRDYA RAMSFIERVN GRGNPTAESL WLGARIARRL GDVSQQNAWS
AQLQRRFPNA PEEAAFERGA WDD
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