Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1142 |
Symbol | |
ID | 1219957 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1198159 |
End bp | 1198836 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637237511 |
Product | integral membrane transmembrane protein |
Protein accession | NP_519263 |
Protein GI | 17545861 |
COG category | [R] General function prediction only |
COG ID | [COG1994] Zn-dependent proteases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATCCCA CCGTCATCCA AACTCTCACG GTCTACGCGA TCCCCGTGCT GTTCGCGATC ACCGTGCCGG CCGCCGCCCG TGGCTATCTC GCCAGGCACT ATGGAGACAA CACGGCGTTC CTGGCGGGCC GGCTGAGTTT CAACCCGCTG CGCCATGTCG ATCCGATCGG TACGATCGCG ATGCCGCTGC TGCTGTACTT CGTGACGGGG GGCGCGCTCG TATTCGGCTA TTCCAAGCCG GTGCCGGTGG ATTTCAGCGC GCTGCGCGAT CCGCGCTGGC AGGGGCTGCG CGTGGCGCTG GCCGCGCCGG AGACCAATTT CGCGATGGCG CTGGCCTGGG GGATGCTCGG GCTCACCCTG GCCGCTGCCG GCATCGACGA GCGCTTCCTG ACGGGCATGG CGGCCGCCGG CGTCGGCGCC AATCTCGCCA TGGTCGCGCT CAATCTCGTC CCGGTGCCGC CGCTGGATGG CGGCCGGGTG CTGGCGGCGC TGCTGCCGCA GCGCCTGGCG CCGGTCTTCG CCCGTGTCGA GCAATATGGT TTCTACATCG TCATGGCGCT GATCCTGACG GGCGTGCTGA CCCAGGTCTG GATGCGCCCG GTCGCGGGGT TGCTGGCCAA GGCGCTGATG ATGGTCCTCA GTCCGCTTCA GGCGGCGCTT TCCTGGTTCG TCTCCTAA
|
Protein sequence | MNPTVIQTLT VYAIPVLFAI TVPAAARGYL ARHYGDNTAF LAGRLSFNPL RHVDPIGTIA MPLLLYFVTG GALVFGYSKP VPVDFSALRD PRWQGLRVAL AAPETNFAMA LAWGMLGLTL AAAGIDERFL TGMAAAGVGA NLAMVALNLV PVPPLDGGRV LAALLPQRLA PVFARVEQYG FYIVMALILT GVLTQVWMRP VAGLLAKALM MVLSPLQAAL SWFVS
|
| |