| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1068 |
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| Symbol | |
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| ID | 1219877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1120323 |
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| End bp | 1121375 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637237431 |
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| Product | beta-hexosaminidase |
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| Protein accession | NP_519189 |
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| Protein GI | 17545787 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0051556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.100642 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCCA TCACCAACAA GCAGAAGCGC CCCGGCCCGA TCGTCCTCGA CGTGGCCGGG
CTCGTGCTCG GCCCTGACGA TGTCCGCCGG ATCGTGCATC CGCTGACCGG CGGCGTGATC
CTGTTCGCGC GCAATTTCGA GTCGCGCGCG CAGTTGACGG CACTGACCGC CGCGATCCGG
GCCATACGCG ATGACGTGCT GATCTGCATC GACCACGAGG GTGGGCGCGT GCAGCGTGCC
AAGCAGGACG GCTTCACGCA TCTGCCGGCG ATGTCCGCGC TGGGGCAGCT GTGGGACCGC
GACGTCCTGG CCGCCACGCG CGCGGCCACC GCGTGCGGCT ATGTGCTGGC GGCGGAATTG
CGCGGCTGCG ACATCGACCT GAGCTTCACG CCGGTGCTGG ACCTGGACTA TGGCACCAGC
GGCGTGATCG GTGACCGCGC TTTCCACCGC GATCCGCGCG TGGTGACGAT GCTCGCCAAC
CACCTGACGC TGGGCCTGCG CCTGGCCGGC ATGGCCAACT GCGGCAAGCA TTTCCCCGGC
CACGGCTGGG TTCAGGCCGA TTCGCACGTC GCCGTGCCGG TCGACGAGCG GCCGCTGCAG
GCGATCCTCG ACGAGGATGC CCAGCCGTAC GGGTGGATGG GCATCGGCCT GCAATCGGTG
ATGCCGGCGC ATGTCATCTA TTCGGCGGTC GATCCGAACC CGGCGGGCTT CTCGCGCTTC
TGGCTGCAGG ACATCCTGCG CACGCATTAC AACTTCGACG GCGTGATCTT CAGCGACGAC
CTGAGCATGG AAGGCGCCAG CGTCGCGGGG TCGGTGGTCG ACGGCGCGCG CGCGGCGCTG
GCGGCCGGCT GCGACATGGT GCTGATCTGC AATGCGCCGG ACAAGGCCGA CCAACTGCTG
AACGAACTGG ACGTGAGGAT CGGCAAGGCT TCGCAGCGAC GCATCCGCCG GCTGTTCGGC
ACCAAGGCGG CCAAGGACTG GTCGAAGCTG GCGCAGCAGT CGGCGTACCG GCAGGCGCTG
CGGACACTGC GCGAGGCACG GCTGATCGCC TAG
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| Protein sequence | MNSITNKQKR PGPIVLDVAG LVLGPDDVRR IVHPLTGGVI LFARNFESRA QLTALTAAIR
AIRDDVLICI DHEGGRVQRA KQDGFTHLPA MSALGQLWDR DVLAATRAAT ACGYVLAAEL
RGCDIDLSFT PVLDLDYGTS GVIGDRAFHR DPRVVTMLAN HLTLGLRLAG MANCGKHFPG
HGWVQADSHV AVPVDERPLQ AILDEDAQPY GWMGIGLQSV MPAHVIYSAV DPNPAGFSRF
WLQDILRTHY NFDGVIFSDD LSMEGASVAG SVVDGARAAL AAGCDMVLIC NAPDKADQLL
NELDVRIGKA SQRRIRRLFG TKAAKDWSKL AQQSAYRQAL RTLREARLIA
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